Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d22
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)                       31   1.00 
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       30   1.3  
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    30   1.3  
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      29   2.3  
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)                29   4.0  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   4.0  
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.0  
SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)                     28   5.3  
SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)                        28   5.3  
SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_43400| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_15839| Best HMM Match : CDO_I (HMM E-Value=6.6)                     27   9.3  
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)                   27   9.3  
SB_31237| Best HMM Match : Cathelicidins (HMM E-Value=0.58)            27   9.3  
SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)                       27   9.3  

>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 329 MPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK 430
           +PV    +++   + K  NN KY L   WY+K++
Sbjct: 7   LPVQNQAKRLRTWRSKTRNNTKYKLICIWYSKVR 40


>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 36  DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 212
           D+ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR CA 
Sbjct: 63  DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 122

Query: 213 MKS 221
           ++S
Sbjct: 123 VRS 125


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 36   DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 212
            D+ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR CA 
Sbjct: 830  DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 889

Query: 213  MKS 221
            ++S
Sbjct: 890  VRS 892


>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 293 LEKKNINYILNVMPVMQDERKMSKRKKKVINNNKY---ILFNSWYTKIKQPEWPSSPAMW 463
           +E K + Y      V +DE K+  RK+ +    +Y   ILFN++    ++ +W  S + W
Sbjct: 26  IEAKTMKYKYGCSDVPRDE-KLDLRKRSLYYLERYFYFILFNTYLNMERRSKWDRSFSQW 84


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/66 (28%), Positives = 36/66 (54%)
 Frame = +2

Query: 179 QSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKM 358
           + S+E +  C     ++++E    N     ++ ++V+F+++ NI   L   P+ QDE + 
Sbjct: 191 EKSSEISLECPEILNVDEIEDEPIN-----EISSLVDFVDE-NIEKSLLKDPLWQDEEEK 244

Query: 359 SKRKKK 376
            KRKKK
Sbjct: 245 GKRKKK 250


>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
          Length = 595

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 113 SRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNF 292
           S  Q G  KG  ++   +     S T +    KN  +    ESS++ +S  D L+A ++ 
Sbjct: 343 SHEQHGELKGSGETVFYSPRAHASDTPSKKPTKNLTM----ESSTFKESEKDVLMASLDI 398

Query: 293 LEKKNINYIL 322
            +KK++N ++
Sbjct: 399 KDKKHVNTLV 408


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 241 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 158
           RF    Q  I+AH  SF +R+LLR + H
Sbjct: 22  RFPRNPQKLIYAHQNSFKKRILLRRIEH 49


>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 368

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 415 PTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 299
           P    N+ +++ +L  A   + +  HDR + E   N+LF
Sbjct: 313 PREVHNILLLMGYLNSALNPYMYSFHDRQFKEAFKNILF 351


>SB_22629| Best HMM Match : CDC37 (HMM E-Value=3.7)
          Length = 504

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 532 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 410
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 395 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 434


>SB_57364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 532 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 410
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 240 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 279


>SB_38222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 532 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 410
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 289 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 328


>SB_6135| Best HMM Match : CSD (HMM E-Value=5.4)
          Length = 254

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 532 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVPT 410
           TH  SV+K   K+C+  RV +Q  H R  R      ++VPT
Sbjct: 198 THWRSVVKKGAKLCEDKRV-NQAKHKRHLRKTRAASVTVPT 237


>SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 781

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 167 MPEQQSSTETAAVCKNEKLLNKLESSS---YNKSNMDQLIAIVNFLEKKNINYILNVMPV 337
           +P   S + T    K EKL +K  + S    NK++M      +N    K+I  + ++   
Sbjct: 576 LPAYGSKSNTIKAFK-EKLFSKKSTDSTKAVNKTSMSPNFVYLNSCYSKSIEVLPSIYAT 634

Query: 338 MQDERKMSKRKKK 376
           +  E+K   R++K
Sbjct: 635 VDKEKKKRDRERK 647


>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 433 LLDLSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLF 299
           L+  ++ T+K N     NH+L  F H  F + +   +E+ V+  F
Sbjct: 102 LILTTLRTIKGNFMFFENHILAKFLHGKFFIGNPETIEESVDATF 146


>SB_43400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 307 H*LYPQRNACHAGRTQNVQTQEE 375
           H LYP RNA   GR+  + T EE
Sbjct: 92  HRLYPDRNAVKLGRSITLHTYEE 114


>SB_41377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 109 IIKNTSG-SFQRFTKIKHGKHAGATIFYRNCGRVQK*KVVE*TGIELLQQIQHGPAN 276
           I+K+T G  F R  K    K +      RNC  +++ K +E + ++L  +I  GP +
Sbjct: 148 IVKHTKGVCFSRRAKDSVKKES------RNCSSIEERKAIENSTVDLCPEISRGPCS 198


>SB_15839| Best HMM Match : CDO_I (HMM E-Value=6.6)
          Length = 313

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 307 H*LYPQRNACHAGRTQNVQTQEE 375
           H LYP RNA   GR+  + T EE
Sbjct: 92  HRLYPDRNAVKLGRSITLHTYEE 114


>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
          Length = 501

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 173 EQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI 310
           + Q S  +A   K  K     +     + N+D  + ++ F E KNI
Sbjct: 162 QNQGSKSSAISNKKSKQQKVTQDKESQRKNLDSCVVVIRFNEDKNI 207


>SB_31237| Best HMM Match : Cathelicidins (HMM E-Value=0.58)
          Length = 562

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 296 EKKNINYILNVMPVMQDERK 355
           EK N N ILN +P+ Q+++K
Sbjct: 248 EKDNSNTILNTLPIKQEQKK 267


>SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)
          Length = 226

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 397 VFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNS 278
           V ++ N L      ++FV+  +HYV++ V  LF  E+  S
Sbjct: 108 VLVLYNLLCSVLSLYSFVIIAKHYVQNGVESLFRMEVNQS 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,079,771
Number of Sequences: 59808
Number of extensions: 438266
Number of successful extensions: 1083
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)