Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d21
(557 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 198 9e-50
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 135 8e-31
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 128 1e-28
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 115 9e-25
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 110 2e-23
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 107 2e-22
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 104 1e-21
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 102 5e-21
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 68 2e-10
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 64 2e-09
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 60 3e-08
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 55 1e-06
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 51 2e-05
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 50 4e-05
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 50 4e-05
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 50 5e-05
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 50 5e-05
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 48 1e-04
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 48 2e-04
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 47 3e-04
UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellu... 45 0.001
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 44 0.003
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 42 0.007
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 42 0.010
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 40 0.030
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 40 0.030
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 40 0.039
UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whol... 40 0.052
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 38 0.12
UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11; ... 38 0.12
UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=... 36 0.48
UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=... 36 0.64
UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;... 36 0.85
UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;... 34 2.0
UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein ... 34 2.6
UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureapla... 34 2.6
UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11; ... 34 2.6
UniRef50_Q7VCT6 Cluster: Predicted protein; n=1; Prochlorococcus... 33 4.5
UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma ... 33 4.5
UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma ... 32 7.9
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 198 bits (482), Expect = 9e-50
Identities = 99/140 (70%), Positives = 106/140 (75%)
Frame = +3
Query: 42 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 221
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 222 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 401
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 402 XXXMKIGRIEDVTPVPSDST 461
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 135 bits (326), Expect = 8e-31
Identities = 63/90 (70%), Positives = 74/90 (82%)
Frame = +3
Query: 69 KEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEA 248
K+EV+ GP G+ V+GV HIFASFNDTFVHVTD+SGRET +VTGGMKVKADRDE+
Sbjct: 13 KQEVKA-YGPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKADRDES 71
Query: 249 SPYAAMLAAQDVAEKCKTLGITALHIKLRA 338
SPYAAM+AAQDV +CK GI ALH+K+RA
Sbjct: 72 SPYAAMMAAQDVVARCKECGINALHVKMRA 101
Score = 34.7 bits (76), Expect = 1.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 413 EDWPH*RCHPRTIRLDP*EGWP 478
EDWPH CHP RL P +G+P
Sbjct: 127 EDWPHRGCHPDPDRLHPPQGFP 148
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 128 bits (308), Expect = 1e-28
Identities = 63/98 (64%), Positives = 71/98 (72%)
Frame = +3
Query: 168 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXX 347
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITALHIK+RA
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKMRAKGG 149
Query: 348 XXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 461
Q +KIGRIEDVTP P+DST
Sbjct: 150 NKTKSPGPGGQSALRALSRSGIKIGRIEDVTPTPTDST 187
Score = 48.8 bits (111), Expect = 8e-05
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 51 RKNKVAKEEVQVT-LGPQHLVGETVFGVAHIFASFNDTFV 167
R V+ V T +GPQ GE VFGVAHIFASFNDTFV
Sbjct: 5 RHRSVSVRRVMATYVGPQAREGELVFGVAHIFASFNDTFV 44
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 115 bits (276), Expect = 9e-25
Identities = 55/70 (78%), Positives = 58/70 (82%)
Frame = +3
Query: 42 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 221
MAPRK K KEEVQV LGPQ GE VF V HI+AS+NDTFVHVTDLSGRETI RVTGG
Sbjct: 1 MAPRKGKTPKEEVQVQLGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQ 60
Query: 222 KVKADRDEAS 251
KVKADRDE+S
Sbjct: 61 KVKADRDESS 70
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 110 bits (264), Expect = 2e-23
Identities = 54/113 (47%), Positives = 70/113 (61%)
Frame = +3
Query: 123 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 302
+G+ HI++S+N+T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 303 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 461
GI +HIK+RA AQ ++IGRIEDVTPVP D T
Sbjct: 69 RGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 107 bits (256), Expect = 2e-22
Identities = 50/122 (40%), Positives = 73/122 (59%)
Frame = +3
Query: 96 PQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 275
P+ + G+AHI++S+N+T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA
Sbjct: 66 PETTPADEKLGIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAA 125
Query: 276 QDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSD 455
V E + G T HI++RA AQ +IGRI+DVTP+P D
Sbjct: 126 NKVIESARAKGFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFRIGRIDDVTPIPHD 185
Query: 456 ST 461
+T
Sbjct: 186 TT 187
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 104 bits (250), Expect = 1e-21
Identities = 50/114 (43%), Positives = 67/114 (58%)
Frame = +3
Query: 120 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 299
+FG+ HI ++ NDT +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 300 TLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 461
LGI ALHIK+RA A KIGRIED TP P++ T
Sbjct: 71 VLGINALHIKIRARGGNASHLISTGAHTVVTTLVRLGFKIGRIEDTTPTPTNGT 124
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 102 bits (245), Expect = 5e-21
Identities = 52/113 (46%), Positives = 70/113 (61%)
Frame = +3
Query: 123 FGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 302
+ VAH+++S NDT + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 303 LGITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVPSDST 461
GIT ++I++RA AQ +++ RIEDVTP+P+D+T
Sbjct: 106 KGITNINIEIRAPGGHGSKTPGHGAQAVVRVLARSGLRVNRIEDVTPIPTDTT 158
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 67.7 bits (158), Expect = 2e-10
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +3
Query: 192 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 338
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L IT LH+KL A
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHA 98
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 64.5 bits (150), Expect = 2e-09
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +3
Query: 192 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 338
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L IT LH+KL A
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDITVLHVKLHA 77
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 60.5 bits (140), Expect = 3e-08
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +3
Query: 219 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 338
MK +AD+DE+SP AML AQDV ++CK LGITALHIKL A
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLA 40
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 55.2 bits (127), Expect = 1e-06
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +3
Query: 84 VTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGR-ETIARVTGGMKVKADRDEASPYA 260
++L PQ + G+ V GV +IFASF D+F++ TD+ G+ T VT MK + E +P
Sbjct: 5 LSLRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCH 62
Query: 261 AMLA-AQDVAEKCKTLGITALHIKLR 335
+ A DV + K + + ALHI+L+
Sbjct: 63 RLHAGCLDVTHRFKEMSVPALHIRLQ 88
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
GVAH+ ++FN+T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 306 GITALHIKLR 335
G+ L ++++
Sbjct: 79 GVKTLEVEVQ 88
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 50.0 bits (114), Expect = 4e-05
Identities = 23/31 (74%), Positives = 26/31 (83%)
Frame = +3
Query: 207 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK 299
V GGMK+KAD DE+SPYAAML +QDVA CK
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCK 241
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 50.0 bits (114), Expect = 4e-05
Identities = 30/108 (27%), Positives = 52/108 (48%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+AHI A+FN+T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 306 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 449
G+ + + ++ A +++ I DVTPVP
Sbjct: 76 GLKTVEVTVKGPGSGRESAIRALA--------AAGLEVTSIRDVTPVP 115
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 49.6 bits (113), Expect = 5e-05
Identities = 32/108 (29%), Positives = 53/108 (49%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+A++ A+FN+T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHG-NVICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 306 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 449
G+ + ++++ A M+I I+D+TPVP
Sbjct: 97 GMKEVEVRIKGPGAGRESAVRGIA--------AAGMEISTIKDITPVP 136
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 49.6 bits (113), Expect = 5e-05
Identities = 34/108 (31%), Positives = 50/108 (46%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
GVAHI + N+T + +TDL G +G + K R + S YAA AA+ A+K L
Sbjct: 152 GVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAKKSIQL 210
Query: 306 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 449
GI + +K+R +KI +I+D TP+P
Sbjct: 211 GIKDVTVKIRG--------FGPGRDSSLRGLQIGGLKIYKIQDTTPLP 250
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 48.0 bits (109), Expect = 1e-04
Identities = 29/99 (29%), Positives = 42/99 (42%)
Frame = -1
Query: 449 WYGGDIFNAANLHT*TSKSPKCRLSTRTRGLCFVSTSSTELYVQGRYAKSFAFLCYILCR 270
W ++ N + + S+ P C L T R F S+ V + F C
Sbjct: 2 WNWSNVLNPSYFKSCPSQGPNCSLCTWPRSFAFASSWGPHPNVNTDNSLFQCFFCCSPSS 61
Query: 269 QHSSVG*RFITVSLHLHATSDTGDSFPAG*ISNMNECVI 153
+H +G R I VS + H T+ + F G ISN+N VI
Sbjct: 62 KHCCIGGRLIPVSFNYHTTAPSAYRFRTGDISNVNNGVI 100
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 47.6 bits (108), Expect = 2e-04
Identities = 30/108 (27%), Positives = 50/108 (46%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+AH+ ASFN+T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 306 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 449
GI L ++++ + ++I I DVTPVP
Sbjct: 83 GIKNLDVEIKG--------PGPGRESSVRALGALGIRINSIADVTPVP 122
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 47.2 bits (107), Expect = 3e-04
Identities = 31/108 (28%), Positives = 49/108 (45%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+AHI ASFN+T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 306 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 449
G+ L + ++ + KI I DVTP+P
Sbjct: 79 GLKNLEVFVKG--------PGPGRESAIRALNAVGYKITNITDVTPIP 118
>UniRef50_Q1IS96 Cluster: 30S ribosomal protein S11; n=274; cellular
organisms|Rep: 30S ribosomal protein S11 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+AHI ASFN+T V ++D SG + +G + + R + +P+AA AA A +
Sbjct: 32 GLAHIQASFNNTIVTISDPSGNVVSWKSSGSLGFRGSR-KGTPFAAQQAAMTAANMARDH 90
Query: 306 GITALHIKL 332
G+ +L +++
Sbjct: 91 GMRSLDVRV 99
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 43.6 bits (98), Expect = 0.003
Identities = 28/108 (25%), Positives = 50/108 (46%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+AHI ++FN+T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAKGSIEH 79
Query: 306 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 449
G+ L + ++ + +++ I DVTPVP
Sbjct: 80 GLKTLEVTVKG--------PGSGREAAIRALQAAGLEVTAIRDVTPVP 119
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 42.3 bits (95), Expect = 0.007
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
GVAHI ++ N+T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 306 GITALHIKLR 335
GI + ++++
Sbjct: 80 GIREVSVRVK 89
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 41.9 bits (94), Expect = 0.010
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
GVAHI ++FN+T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAKAAMEQ 80
Query: 306 GITALHIKLR 335
+ ++ I ++
Sbjct: 81 NMHSVAISVK 90
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 40.3 bits (90), Expect = 0.030
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 135 HIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGIT 314
H+ N TFV VTD+ G + G ++ + R S YAA A+ V + +G+
Sbjct: 248 HVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLK 307
Query: 315 ALHIKLR 335
++ +K++
Sbjct: 308 SVVMKVK 314
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 40.3 bits (90), Expect = 0.030
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +3
Query: 138 IFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITA 317
I + N+TFV++TDL G +G + K + ++S YAA + V + C I
Sbjct: 15 ISTTLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFCAQQSIEK 73
Query: 318 LHIKLR 335
L IKLR
Sbjct: 74 LMIKLR 79
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 39.9 bits (89), Expect = 0.039
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = +3
Query: 120 VFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 299
V G AH+ +FN+ ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 300 TLGITALHIKL 332
+G+ L++ L
Sbjct: 67 RIGLKILNVHL 77
>UniRef50_Q4S8D4 Cluster: Chromosome undetermined SCAF14706, whole
genome shotgun sequence; n=3; cellular organisms|Rep:
Chromosome undetermined SCAF14706, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 215
Score = 39.5 bits (88), Expect = 0.052
Identities = 19/69 (27%), Positives = 40/69 (57%)
Frame = +3
Query: 129 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 308
+AH+ A++N+T + VTD +G+ ++ R + G + + +++P AA A A K G
Sbjct: 106 IAHVKATYNNTHIQVTDSAGK-SMVRTSCGTEGFKNIKKSTPIAAQTAGISAAAKATAKG 164
Query: 309 ITALHIKLR 335
+T + + ++
Sbjct: 165 VTFVRVVVK 173
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 38.3 bits (85), Expect = 0.12
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 129 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 308
+ H+ N+TFV VTD G + G ++ S YAA A+ V + LG
Sbjct: 46 LVHLLPLHNNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLG 105
Query: 309 ITALHIKLR 335
+ ++ +K++
Sbjct: 106 MKSVVMKVK 114
>UniRef50_P56802 Cluster: Chloroplast 30S ribosomal protein S11;
n=85; Tracheophyta|Rep: Chloroplast 30S ribosomal
protein S11 - Arabidopsis thaliana (Mouse-ear cress)
Length = 138
Score = 38.3 bits (85), Expect = 0.12
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
GV H+ ASFN+T V VTD+ GR G + R +P+AA AA +
Sbjct: 28 GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQ 86
Query: 306 GITALHIKLR 335
G+ ++++
Sbjct: 87 GMQRAEVRIK 96
>UniRef50_P46746 Cluster: Mitochondrial ribosomal protein S11; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S11 - Prototheca wickerhamii
Length = 128
Score = 36.3 bits (80), Expect = 0.48
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+ HI ++ N+T + +TDL G G + K R +++ YA+ AA+ +A K
Sbjct: 18 GIVHIQSTTNNTLITLTDLEGNTQFFVSAGTLGFKNSR-KSTVYASGAAAEALASKAFNE 76
Query: 306 GITALHIKLR 335
G + +K++
Sbjct: 77 GYRTIIVKIK 86
>UniRef50_Q9C6S3 Cluster: 30S ribosomal protein S11, putative; n=2;
Arabidopsis thaliana|Rep: 30S ribosomal protein S11,
putative - Arabidopsis thaliana (Mouse-ear cress)
Length = 235
Score = 35.9 bits (79), Expect = 0.64
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +3
Query: 114 ETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 293
ET + HI N+TFV VTD G +G + + + Y A A+++ +
Sbjct: 111 ETNADIIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRR 170
Query: 294 CKTLGITALHIKL 332
K +G+ ++ +K+
Sbjct: 171 AKAMGLKSVVVKV 183
>UniRef50_P30059 Cluster: Plastid 30S ribosomal protein S11; n=4;
Streptophyta|Rep: Plastid 30S ribosomal protein S11 -
Epifagus virginiana (Beechdrops)
Length = 136
Score = 35.5 bits (78), Expect = 0.85
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAA 275
GV H+ SFN+T V VTD+ GR G K R + +AA +AA
Sbjct: 28 GVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCGFKGTR-RGTSFAAQIAA 76
>UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;
Plasmodium knowlesi|Rep: 205 kDa Pk1(B+)1+ SICAvar
antigen - Plasmodium knowlesi
Length = 1759
Score = 34.3 bits (75), Expect = 2.0
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +2
Query: 272 GTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGS 397
GT NS NG H PC+W K +K W C + TSGS
Sbjct: 212 GTKPGTSCHNS--NGKEHCVPCHWDKDDK--WKDCKITTSGS 249
>UniRef50_UPI0000586F02 Cluster: PREDICTED: hypothetical protein
isoform 1; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein isoform 1 -
Strongylocentrotus purpuratus
Length = 261
Score = 33.9 bits (74), Expect = 2.6
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +3
Query: 129 VAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLG 308
+ +I A++N+T V V + +GR T+AR + G + + + + AA AA A K G
Sbjct: 152 IVNIKATYNNTHVSVAEHTGR-TVARTSCGTEGFKNAKKGTAIAAQTAAIAAATKAVDKG 210
Query: 309 ITALHIKLR 335
+ A+ + ++
Sbjct: 211 MNAVRVVIK 219
>UniRef50_Q9PQN5 Cluster: 30S ribosomal protein S11; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S11 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 121
Score = 33.9 bits (74), Expect = 2.6
Identities = 23/108 (21%), Positives = 50/108 (46%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+A+I A+ N+T + + D G +G + K + + +PY+A +AA+ A+ +
Sbjct: 12 GIAYIHATKNNTIITLADEQGSVLSWASSGSIGYKGTK-KKTPYSAGIAAEAAAKAVIDM 70
Query: 306 GITALHIKLRAXXXXXXXXXXXXAQXXXXXXXXXXMKIGRIEDVTPVP 449
G+ ++ + + +++ +I+DVTP+P
Sbjct: 71 GLKSVEVHVNG--------TGASRDTAIRSLQAAGLEVTKIKDVTPIP 110
>UniRef50_Q9TLV1 Cluster: Chloroplast 30S ribosomal protein S11;
n=10; cellular organisms|Rep: Chloroplast 30S ribosomal
protein S11 - Cyanidium caldarium
Length = 129
Score = 33.9 bits (74), Expect = 2.6
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+ I ++FN+T V TD G+ IA +GG + + +P+AA A + + +
Sbjct: 19 GLIIINSTFNNTIVTATDCYGK-VIAWASGGTEGFKGAKKGTPFAAQSATEKLIKALLEQ 77
Query: 306 GITALHIKL 332
G +HI +
Sbjct: 78 GTQRIHISV 86
>UniRef50_Q7VCT6 Cluster: Predicted protein; n=1; Prochlorococcus
marinus|Rep: Predicted protein - Prochlorococcus marinus
Length = 58
Score = 33.1 bits (72), Expect = 4.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 383 CTSGSCSFKYEDWPH*RCHPRTIRLD 460
C++ SCSF Y+DW H R H + D
Sbjct: 4 CSNRSCSFPYDDWHHCRIHRSKVTND 29
>UniRef50_Q8W9P7 Cluster: Ribosomal protein S11; n=1; Mesostigma
viride|Rep: Ribosomal protein S11 - Mesostigma viride
Length = 128
Score = 33.1 bits (72), Expect = 4.5
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 305
G+ H+ + N+T + +TD G TI + GM + + +A+ AQ + +CK L
Sbjct: 18 GILHVQTTLNNTIMTLTDRKG-NTIFGFSSGMLGFGGSRKKTRFASRSVAQHMVLRCKQL 76
Query: 306 GITALHIKLR 335
I L + ++
Sbjct: 77 RIQRLILAIK 86
>UniRef50_Q49081 Cluster: 30S ribosomal protein; n=1; Mycoplasma
capricolum|Rep: 30S ribosomal protein - Mycoplasma
capricolum
Length = 80
Score = 32.3 bits (70), Expect = 7.9
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 126 GVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYA 260
G+AHI ++FN+T V V+D G G + K + +++PYA
Sbjct: 11 GIAHIHSTFNNTIVTVSDEKGNVLSWSSAGAIGFKGSK-KSTPYA 54
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,702,463
Number of Sequences: 1657284
Number of extensions: 11303476
Number of successful extensions: 26166
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 25080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26148
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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