Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d18
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.27 
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 419 EHNYTREIVRLMTTLPVPSNRNTLSHSCTERHAQL 523
           EH +T +I +L  T+P     NTL   C +RHA L
Sbjct: 545 EHAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 657  RRLXSDLTRQRQRPASADFHDAVPGYSGAHASPPSTETVAAG 532
            RR+ + +     RP ++      PG+S A   P + ETVAAG
Sbjct: 1499 RRISTKIKDSTSRPETSQTQTEAPGHSTAVYFPTTYETVAAG 1540


>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1071

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 640 PHTSATTPCVRRFS*CCSRVLRCT 569
           P T   TPC  R+S C  R   CT
Sbjct: 660 PSTERYTPCTERYSPCTERYTPCT 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,088,454
Number of Sequences: 59808
Number of extensions: 409112
Number of successful extensions: 1223
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)