Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d17
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0717 - 31446860-31447074,31447183-31447270,31448909-314490...   184   9e-47
05_03_0012 - 7355493-7355645,7356309-7356370,7356885-7356972,735...   139   2e-33
05_06_0247 + 26661671-26661802,26661958-26662055,26662223-266622...    29   2.9  

>01_06_0717 - 31446860-31447074,31447183-31447270,31448909-31449012,
            31449618-31449745,31450461-31450555,31461823-31463115,
            31463188-31464039,31464568-31464621
          Length = 942

 Score =  184 bits (447), Expect = 9e-47
 Identities = 85/127 (66%), Positives = 103/127 (81%)
 Frame = +1

Query: 97   TLFMGADKNENEDLIKWGWPEDVWFHVDKVSSAHVYLRLTPGQTIDDIPNLVLDDACQLV 276
            T++MGADKNENE+LIK+G PEDVWFHVDKVSSAHVYLRL  G++ID I + +L+D  QLV
Sbjct: 742  TIYMGADKNENEELIKYGLPEDVWFHVDKVSSAHVYLRLKKGESIDSICDGLLEDCAQLV 801

Query: 277  KANSILGNKMNDIDIVYTMWSNLKKTAGMEVGQVAFHKDREVRKAKVAKRNNEIVNRLNK 456
            KA+SI GNKMN++++VYT WSNLKK+  M+VGQV FH  R VR   V KR NEI+NRLNK
Sbjct: 802  KAHSIQGNKMNNVEVVYTPWSNLKKSPSMDVGQVGFHNTRMVRVVIVEKRVNEIINRLNK 861

Query: 457  TKTESFP 477
            T+ E  P
Sbjct: 862  TRVERRP 868


>05_03_0012 -
           7355493-7355645,7356309-7356370,7356885-7356972,
           7357677-7357780,7357931-7358010,7359127-7359183,
           7359924-7360036
          Length = 218

 Score =  139 bits (337), Expect = 2e-33
 Identities = 84/160 (52%), Positives = 94/160 (58%), Gaps = 19/160 (11%)
 Frame = +1

Query: 55  MVFYFTSSVVCPPVTLFMGADKNENEDLIKWGWPEDV------------W-------FHV 177
           MVFYF         T+FMG DK ENEDLIK+G+PED+            W       FHV
Sbjct: 1   MVFYFKVRPEAGDYTIFMGLDKFENEDLIKYGFPEDICWLQIIGSVVHAWAIMIRKMFHV 60

Query: 178 DKVSSAHVYLRLTPGQTIDDIPNLVLDDACQLVKANSILGNKMNDIDIVYTMWSNLKKTA 357
           DK+SSAHVYLRL  GQT+DDI                  GNK N+ID+VYT W NLKKT 
Sbjct: 61  DKMSSAHVYLRLNKGQTMDDISE----------------GNKTNNIDVVYTPWYNLKKTP 104

Query: 358 GMEVGQVAFHKDREVRKAKVAKRNNEIVNRLNKTKTESFP 477
            M+VGQV FH  + VR  KV KR NEIVNRLNKTK E  P
Sbjct: 105 SMDVGQVGFHNSKLVRIVKVEKRINEIVNRLNKTKVERKP 144


>05_06_0247 +
           26661671-26661802,26661958-26662055,26662223-26662253,
           26662607-26662667,26662693-26662754,26662793-26662892,
           26663021-26663091,26663206-26663349,26663913-26663994,
           26664380-26664456
          Length = 285

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +1

Query: 286 SILGNKMN--DIDIVYTMWSNLKK--TAGMEVGQVAFHKDREVRKAKVAKRNNEIV 441
           +I+ NKM   D++ +Y+   N  K   +G  VG+V   +D   RKA++A+R+   +
Sbjct: 103 NIIDNKMFYFDLEGLYSFVKNFVKGVISGESVGEVIVVQDMHERKAEMARRSKAFI 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,714
Number of Sequences: 37544
Number of extensions: 280116
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)