Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d17
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38433| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_21196| Best HMM Match : I-set (HMM E-Value=1.3)                     28   6.8  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  

>SB_38433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/39 (66%), Positives = 29/39 (74%)
 Frame = +1

Query: 361 MEVGQVAFHKDREVRKAKVAKRNNEIVNRLNKTKTESFP 477
           MEVGQV F+ D++VR   V KR NE VNRLNKTK E FP
Sbjct: 1   MEVGQVGFYNDKQVRLIPVVKRRNEAVNRLNKTKEERFP 39


>SB_58595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1462

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 100  LFMGADKNENEDLIKWGWPEDVWFHVDKVSSAHVYLRLTPGQTIDDIPNLVLDDACQLVK 279
            +F+  +K  NE+ I +   E  W H+ ++      L +    T + I N   DD C+L++
Sbjct: 1066 IFLQNNKVANENPISFSSAETQWMHLLRILG---QLVVNKEYTDEQINNFNWDDRCRLIQ 1122

Query: 280  ANSI 291
            ++ +
Sbjct: 1123 SDPV 1126


>SB_21196| Best HMM Match : I-set (HMM E-Value=1.3)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 417 HFR-LSYFSVFMECYLSNLHSSSLLQ 343
           HFR L+Y  + +EC +SN H S L Q
Sbjct: 170 HFRTLAYRDLTLECIVSNKHGSDLYQ 195


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 238 IPNLVLDDACQLVKANSILGNKMNDIDIVYTMWSNLKKTAG 360
           IP LV D    +V A+  +  ++ D  + YT WSN++   G
Sbjct: 252 IPPLVYDRLTFIVAASPRILRELCDRHLEYTTWSNIRVCVG 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,340,620
Number of Sequences: 59808
Number of extensions: 329433
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)