Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d17
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical ...   188   3e-48
Z46937-7|CAH10806.1|  109|Caenorhabditis elegans Hypothetical pr...   133   1e-31
U37548-5|ABM01869.1|  224|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AL034488-2|CAA22448.1|  210|Caenorhabditis elegans Hypothetical
           protein Y54G11A.2 protein.
          Length = 210

 Score =  188 bits (459), Expect = 3e-48
 Identities = 87/136 (63%), Positives = 102/136 (75%)
 Frame = +1

Query: 55  MVFYFTSSVVCPPVTLFMGADKNENEDLIKWGWPEDVWFHVDKVSSAHVYLRLTPGQTID 234
           MV  F+S+   PP  ++MG DK ENEDLIK+GWPEDVWFHVDK+SSAHVYLRL  G TID
Sbjct: 1   MVIKFSSNTTNPPTMIYMGVDKVENEDLIKYGWPEDVWFHVDKLSSAHVYLRLHSGMTID 60

Query: 235 DIPNLVLDDACQLVKANSILGNKMNDIDIVYTMWSNLKKTAGMEVGQVAFHKDREVRKAK 414
            IP  +L D CQLVK NSI G K+N++ IVYTMWSNLKKT  M VGQV FH  ++V+   
Sbjct: 61  SIPEALLIDCCQLVKQNSIEGCKLNNVAIVYTMWSNLKKTGDMAVGQVGFHSHKQVKHTV 120

Query: 415 VAKRNNEIVNRLNKTK 462
           V  + NEIVNRL KT+
Sbjct: 121 VPTKINEIVNRLEKTR 136


>Z46937-7|CAH10806.1|  109|Caenorhabditis elegans Hypothetical
           protein F43C1.7 protein.
          Length = 109

 Score =  133 bits (322), Expect = 1e-31
 Identities = 64/109 (58%), Positives = 77/109 (70%)
 Frame = +1

Query: 55  MVFYFTSSVVCPPVTLFMGADKNENEDLIKWGWPEDVWFHVDKVSSAHVYLRLTPGQTID 234
           MVF F SS V PP  +FMG  + ENE L K G P DVWFHVDKVSSAHVYL+L  G TID
Sbjct: 1   MVFGFISSTVTPPALIFMGEHQVENEKLFKCGDPGDVWFHVDKVSSAHVYLQLPSGITID 60

Query: 235 DIPNLVLDDACQLVKANSILGNKMNDIDIVYTMWSNLKKTAGMEVGQVA 381
            IP  +L++ CQLVK NSI G KM  +++ YT+  NLKK  GM+ G+V+
Sbjct: 61  TIPEELLEECCQLVKKNSIQGVKMEKVEVNYTLKENLKKVKGMQTGEVS 109


>U37548-5|ABM01869.1|  224|Caenorhabditis elegans Hypothetical
           protein C54D2.6 protein.
          Length = 224

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +1

Query: 154 PEDVWFHVDKVSSAHVYLRLTPGQTIDDIPNLVLDDACQLVKANSILGNKMNDIDIVYTM 333
           PEDV F V+++      L   P Q+I+++   + D   +LVKANS L +K +  ++  + 
Sbjct: 27  PEDVGF-VERIIDQLEALP-DPPQSINNVLPAIQDFRNELVKANSFLISKTS--EVAESP 82

Query: 334 WSNLKKT----AGMEVGQVAF 384
           +   K+T    AG ++ Q+ F
Sbjct: 83  YQPFKETAAVFAGCQINQIKF 103


>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
           protein F20G4.1 protein.
          Length = 1615

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 325 YTMWSNLKKTAGMEVGQVAFHKDREVRKAK 414
           YT+W++LKK  GM +G+ A     E   AK
Sbjct: 415 YTVWNSLKKLVGMAMGEPAEQLHFETHIAK 444


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -1

Query: 481 GLEMILFLFYSAYLLFHYF--FWPLSPFLLLCLYGMLLVQPPFQQSSSNLTTLYKLCLYH 308
           GL +++  F S   ++ YF  F P +  +   + G  L+  P    +    +LY  CL  
Sbjct: 96  GLYLVIVAFISIQFIYRYFCFFTPKNMRMFKGIRGFCLIAYPLVPGAVYAGSLYLFCLPD 155

Query: 307 SFY 299
             Y
Sbjct: 156 ELY 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,193
Number of Sequences: 27780
Number of extensions: 273521
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)