Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d17
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11500.1 68418.m01342 expressed protein contains Pfam profile...   198   3e-51
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    28   7.4  
At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    28   7.4  
At3g48185.1 68416.m05256 expressed protein                             28   7.4  
At4g15970.1 68417.m02424 expressed protein similar to GI:2827651...    27   9.8  

>At5g11500.1 68418.m01342 expressed protein contains Pfam profile
           PF05670: Domain of unknown function (DUF814)
          Length = 215

 Score =  198 bits (483), Expect = 3e-51
 Identities = 94/141 (66%), Positives = 109/141 (77%)
 Frame = +1

Query: 55  MVFYFTSSVVCPPVTLFMGADKNENEDLIKWGWPEDVWFHVDKVSSAHVYLRLTPGQTID 234
           MVFYF +       T+FMG DK ENE+LIK+G+PEDVWFHVDK+SSAHVYLRL  GQ+ D
Sbjct: 1   MVFYFKARPDAGDYTIFMGLDKFENEELIKYGFPEDVWFHVDKMSSAHVYLRLHRGQSFD 60

Query: 235 DIPNLVLDDACQLVKANSILGNKMNDIDIVYTMWSNLKKTAGMEVGQVAFHKDREVRKAK 414
           DI   VL+D  QLVKANSI GNK+N++D+VYT WSNLKKTA M+VGQV FH  + VR  +
Sbjct: 61  DISEGVLEDCAQLVKANSIQGNKVNNVDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTIR 120

Query: 415 VAKRNNEIVNRLNKTKTESFP 477
           V KR NEIVNRLNKTK E  P
Sbjct: 121 VEKRVNEIVNRLNKTKVERTP 141


>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
            contains similarity to potato calmodulin-binding protein
            PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +1

Query: 115  DKNENEDLIKWGWPEDVWFHVDKVSSAHV-YLRLTPGQTIDDIPNLVLDDACQLVKANSI 291
            ++NE E   KW +  D    +D  ++A V  ++L     + +IP+   D+      +NS+
Sbjct: 781  NRNETEQEHKWSYGTDQMTGIDDANAAAVKSIQLAFETILSEIPDSSSDEESVSESSNSL 840

Query: 292  LGNKMNDIDIVYTMWSNLKK 351
               K +  +     W++L+K
Sbjct: 841  KEEKEHQGE-TKRSWNSLRK 859


>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +1

Query: 124 ENEDLIKWGWPEDVWFHVDKVSSAHVYLRLTPGQTIDDIPNLVLDDACQLVKANSILGNK 303
           ENE     G P+D WF     S  H  L+ +       IP L+LD   +  +   I  + 
Sbjct: 599 ENELCDLKGIPQDKWFCCSDCSRIHRVLQSSASCGPQTIPTLLLDTISRKYREKGIYIDN 658

Query: 304 MNDID 318
            N ++
Sbjct: 659 GNTVE 663


>At3g48185.1 68416.m05256 expressed protein
          Length = 85

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 468 FC--FCFIQPIYYFIISFGHFRLSYFS 394
           FC  F F  P+Y++++ F  FR+S FS
Sbjct: 48  FCVSFSFDYPLYFYLLLFFFFRISPFS 74


>At4g15970.1 68417.m02424 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853 from
           [Arabidopsis thaliana]
          Length = 367

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 241 PNLVLDDACQLVKANSILG--NKMNDIDIVYTMWSNLKKTAGMEVGQVAFHKDRE 399
           P+  LD  C +  AN  +G  NK+ D+  V   W N    A    GQ+   +D E
Sbjct: 254 PSRDLDKVCTM-HANCCVGLENKIKDLRQVIVDWENYVSAAKTTDGQIMTWRDPE 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,059
Number of Sequences: 28952
Number of extensions: 243269
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)