Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d16
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 31 0.16
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 30 0.27
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 30 0.36
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 28 1.5
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 27 1.9
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.5
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 26 4.4
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 26 4.4
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 4.4
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 26 5.9
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 5.9
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 5.9
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.8
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 7.8
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 25 7.8
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 7.8
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 31.1 bits (67), Expect = 0.16
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +3
Query: 357 SRQRARSNRTADILFEQF*TRNFSRHVGLLANYFGPL*TFHEKRKTAA 500
S + A SN D LF TR+ V LLA + F+EKRKT A
Sbjct: 437 SIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLA 484
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/68 (20%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 94 DVYGESYHHH-RIVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIK 270
+ + ++Y+ H ++V ++ S++Y N ++R I S +A K++ + ++++
Sbjct: 366 NAFSQNYYSHLQMVAKHFSKNYANQSGIVQRSFAEC----ISSTFITKAFKLV-SSNTLQ 420
Query: 271 SLSHWFST 294
++SH+++T
Sbjct: 421 AMSHFYAT 428
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 29.9 bits (64), Expect = 0.36
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -1
Query: 368 TLTGTTASICSNTLRT--LSSMPVVSPVLNQWERLLMESPASIILTASSKVQLPIFKRRI 195
TL GTT N LS++P+V+ L W+ E II T + ++Q P
Sbjct: 25 TLEGTTVRPKKNKFLVGLLSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPK 84
Query: 194 AVTSRSMHDISFT 156
VT + + +T
Sbjct: 85 TVTEQDTKKLEWT 97
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = -3
Query: 339 LQHFTDVIV-----DARRFAGAEPMGKAFDGIARVYHLDRFVKGATADLQTPHSGHVPLY 175
+Q FT +V DA F G E GKAF + + HL+ TP +V L+
Sbjct: 195 IQEFTPQLVQLAKSDANNFGGTEYGGKAFSDL--IIHLNSQFPDDIGLFVTPFLNYVRLH 252
Query: 174 ARHIVYVR 151
V++R
Sbjct: 253 PGEAVFLR 260
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -3
Query: 558 KFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVL 427
K+ + +D+V +G ++ VS+ AAQN+ +AAQ+VL
Sbjct: 27 KYGLKSNDAVLASESQMGIYKEPCVSYSAGGAAQNSCRAAQYVL 70
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 244 MIDAGDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRV 375
M+DA + SHW T I + L + +PVSVRV
Sbjct: 784 MLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRV 827
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = -1
Query: 440 PNMS*EISRSKLFKENICRPV*TRTLTGTTASICSNTLRTLSSMPVV--SPVLNQWERLL 267
P +S IS + P T+ + S T + ++ P+ +P+ NQ+ ++
Sbjct: 1293 PAVSASISTPPAVVPTVQHPQPTKQIPTAAVKDPSTTSTSFNTAPIPQQAPLENQFSKMS 1352
Query: 266 MESPASIILTASSKVQLP 213
+E P + S K Q+P
Sbjct: 1353 LEPPVRPAVPTSPKPQIP 1370
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 46 AKLIIYNYYAKYNEVHDVYGESYH 117
+KLIIYN ++ +H +G++ H
Sbjct: 40 SKLIIYNKVCQFGRIHIFHGKNRH 63
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 555 FIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQN 454
FIV P S R++ GDV F +S E + N
Sbjct: 226 FIVLPKSSTPRRIKENGDVFDFEISKEDMEKLYN 259
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 576 HISYHTKFIVPPSDSVAIRVE 514
++ Y K +VPPSDS+ + E
Sbjct: 230 YVMYSNKLVVPPSDSIIKKCE 250
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 85 EVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLKI 213
++ D YG + +I+QE+ S S + S ++RD++ + KI
Sbjct: 206 DIEDDYGSN--EEKILQEFESFSSSSSESLVDRDISQPMKKKI 246
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = -3
Query: 555 FIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVLRNFSFKIVQREYL 388
F++ P+D V +R + D ++ VS EM+ A + ++ + + + ++Y+
Sbjct: 343 FVISPNDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLPEIPPSLQISELAKKYI 398
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 73 AKYNEVHDVYGESYHHHRIVQEY---LSESYVNDMSCIERD--VTAMRRLKIGSCTF 228
AK + + VYG S+ ++ +QEY L+E+ D I RD + + GSC F
Sbjct: 257 AKNDSLQRVYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEISPGSCFF 313
>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 160 NDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKS 273
+ + CI + + ++LK+ C +E +K+ D G I +
Sbjct: 170 HSLGCIPLNQDSFKQLKLLICILEEDIKLDDCGLEISA 207
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/102 (22%), Positives = 43/102 (42%)
Frame = -1
Query: 641 FFTASDKRGTNSAGTLRCIILCT*VITQNLLYHHPTASLLGLNTLAMCSSFPFLMKCSKR 462
+F ++D + +S LR I + + L ++ +AS LG L + S P ++
Sbjct: 1077 YFASADLQPMHSIIALRLAINAS-----HKLKNYKSASFLGNKLLQLAESGPAAEAANRA 1131
Query: 461 PKIICKQPNMS*EISRSKLFKENICRPV*TRTLTGTTASICS 336
+ + P+ + EI + IC T +G +CS
Sbjct: 1132 ITLGDRNPHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCS 1173
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = +1
Query: 157 VNDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKSL-----SHWFSTGETT--GI- 312
V D+ C+ +T+ G C +++ + + ++IK S W ++ T GI
Sbjct: 456 VPDIRCVHSVLTSQLNETTGRCEMTDSIIIASSNETIKFFDLSEESSWHNSRVLTWHGIF 515
Query: 313 DDNVRKVLEQIDAVVPVSVR 372
D + ++LE ID + +R
Sbjct: 516 DSQILEMLEGIDGKIDSHLR 535
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 313 DDNVRKVLEQIDAVVPVSV-RVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNG 489
D + K+ I+ SV R F+ NN +Q++L C++I+LG+ E
Sbjct: 85 DSEINKITHIINFAAESSVDRSFIDPLYFTKNNILS--TQNLLECVRILLGKKEELRNRL 142
Query: 490 KLLHIA 507
+H++
Sbjct: 143 NFVHVS 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,353
Number of Sequences: 5004
Number of extensions: 58070
Number of successful extensions: 241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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