Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d16
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1104 + 27623632-27623795,27624052-27624175,27624316-276248... 34 0.092
05_07_0012 + 27041475-27042476 30 2.0
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861... 29 2.6
05_03_0611 + 16171038-16171124,16171419-16171505,16173692-161737... 29 4.6
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792 28 6.0
09_04_0432 + 17510820-17510996,17511076-17511546 28 6.0
08_02_0894 + 22346027-22347925 28 6.0
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 28 8.0
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 28 8.0
09_02_0384 - 8294914-8297817 28 8.0
>06_03_1104 +
27623632-27623795,27624052-27624175,27624316-27624832,
27624943-27625073,27625161-27625567,27625690-27625963,
27626195-27626814,27627424-27627859
Length = 890
Score = 34.3 bits (75), Expect = 0.092
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 112 YHHHRIVQEYLSESYVN-DMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKSLSHWF 288
Y H + +QE L + + C D+TA S +F E + + ++ L HWF
Sbjct: 708 YCHLKSLQEMLQKEQPRWNSDCPRYDLTAALEPVKCSFSFSEVINVPLGWQALNKLIHWF 767
Query: 289 STGETTGIDDNVR 327
+GE ID + R
Sbjct: 768 YSGELPKIDPDCR 780
>05_07_0012 + 27041475-27042476
Length = 333
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 49 KLIIYNYYAKYNEVHDVYGESYHH 120
K+I+YN K+ EV D + ++Y H
Sbjct: 210 KMIVYNIATKFREVSDYFRQNYQH 233
>04_04_0487 -
25585229-25585540,25585627-25585745,25586029-25586194,
25586295-25586427,25586527-25586618,25586739-25586925,
25587183-25587271,25587318-25587379,25587462-25587567,
25587754-25588052,25588181-25588288,25588369-25588439,
25588792-25588871
Length = 607
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -1
Query: 392 ICRPV*TRTLTGTTASICSNTLRTLSSMPV--VSPVLNQWERLLMESPASIILTASSKVQ 219
+C+ TRT+ G + +IC + R+ P + ++N R L + +S++ ++
Sbjct: 26 VCKCATTRTMDGYSCAICKSAYRSQDLRPASHLEAIVN-IHRSLSSTVSSMVTQQEAQAD 84
Query: 218 LPIFKRRIAVTSRS 177
+P+ K T S
Sbjct: 85 IPVAKTSFQGTPES 98
>05_03_0611 +
16171038-16171124,16171419-16171505,16173692-16173746,
16174277-16174647
Length = 199
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 208 KIGSCTFDE-AVKMIDA-GDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQT 381
K+GS F + A K ID+ GD I L + GI+ N R+ L +I V +S + T
Sbjct: 7 KVGSYWFSKRASKEIDSIGDDISLLVEADAADTGKGIEWNSRRRLVEIVTVQSISTSIGT 66
Query: 382 G 384
G
Sbjct: 67 G 67
>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
Length = 264
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 263 PSKAFPIGSAPAKRRASTITSVKCWSKSTRWFPSACAFK 379
P++A+ + +A + I +V C + ++RW P AF+
Sbjct: 200 PARAYAVDAAGGGGGDAVIAAVVCHADTSRWDPDHAAFR 238
>09_04_0432 + 17510820-17510996,17511076-17511546
Length = 215
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 127 IVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETT 306
+V+E E V SC + A RR+K C D M + GD+ +S+S E
Sbjct: 95 VVEE--EEVEVEGCSCDAGERQAARRVKASVCCADRPGLMSELGDAERSVSARAVRAEIA 152
Query: 307 GIDDNVRKVLE 339
+ R LE
Sbjct: 153 TVGGRTRSDLE 163
>08_02_0894 + 22346027-22347925
Length = 632
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 289 STGETTGIDDN-VRKVLEQIDAVVPVSVRVQTGRQIFSLNNFER---EISQDMLGCLQII 456
S G ++GI + +R+ +A + RVQ+G + E IS+ ++ +
Sbjct: 525 SGGFSSGISKSALRERFRSFNAAFEEAHRVQSGWCVPDTQLREELRISISEKLVPAYRSF 584
Query: 457 LGRFEHFMRNGK 492
LGRF H + NGK
Sbjct: 585 LGRFRHHIENGK 596
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -3
Query: 480 HEMFKAAQNNLQAAQHVLRNFSFKIVQREYLPSG-LNA--HADGNHRVDLLQHFTDVIVD 310
H + A NL + N F+ + EY+P+G L A H++G ++ L+ D+++D
Sbjct: 846 HVLRMARHRNLIKILNTCSNLDFRALVLEYMPNGSLEALLHSEGRMQLGFLER-VDIMLD 904
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -3
Query: 483 SHEMFKAAQNNLQAAQHVLRNFSFKIVQREYLP-SGLNAHADGNHRVDLLQHFTDVIVDA 307
SH +F++ Q + + NF+ + P L++ DG D+LQ+F + + A
Sbjct: 603 SHPLFRSLQT-VHKEDYYNPNFATVDARGPREPWHDLHSKIDGPAAYDVLQNFQERWLKA 661
Query: 306 RRFAGAEPMGKAFD 265
+ G + +GK++D
Sbjct: 662 SKRHGIKKLGKSYD 675
>09_02_0384 - 8294914-8297817
Length = 967
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Frame = -1
Query: 482 LMKCSKRPKIICKQPNMS*EISRSKLFKENICRPV*TRTLTGTTASICSN---TLRTLSS 312
+M+ KR K+ C QP+ + E+ + +E IC + + + C L T+
Sbjct: 290 VMEADKRIKLECLQPDEAWELFKYSATEETICADMPIENVAKRVCAKCRGLPLALITVGR 349
Query: 311 MPVVSPVLNQWERLLMESPASIILTASSKVQL 216
+WE L S L +S++++
Sbjct: 350 SMRAKRTWREWENALSTFDESTQLLEASEMKV 381
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,419
Number of Sequences: 37544
Number of extensions: 381741
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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