Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d16
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)          31   1.2  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      29   2.7  
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)         29   4.7  
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)         29   4.7  
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_28772| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
          Length = 1286

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 262 SIKSLSHWFSTGETTGIDDNVR-KVLEQIDAVVPVSVRVQTGRQIFSLNNF-EREI-SQD 432
           S+K L HW   G T  + +N+  K +E        S+  +    ++ L NF  +++   D
Sbjct: 56  SVKKLGHWTEFGRTESLPNNLSPKFVESFVLEPSASLYPRLRFSLYDLANFTSKDLRKHD 115

Query: 433 MLGCLQI 453
            +GC +I
Sbjct: 116 FIGCTEI 122


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 600 HASMHYSVHISYHTKFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNN 451
           H+S HY    S   K ++PPS ++ +R +H+      S  H    +A  N
Sbjct: 230 HSSSHYKSSSSSSLKPLIPPSPTLGLRDKHL--ASSSSKGHPPIPSASQN 277


>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
          Length = 575

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 566 ITQNLLYHHPTASLLGLNTLAMCSSF 489
           I QNL +HH T S L ++ L M S +
Sbjct: 21  INQNLEFHHKTVSTLAIDLLHMLSQY 46


>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
          Length = 609

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 366 ADGNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYHLDRFVKGATADLQTPHSGH 187
           ADG     + Q +   + D +   G   +G++ DG  +VY L  F+ G+     TP   +
Sbjct: 70  ADGEEEETICQEYEGGLNDDKIAGGLSQLGRSADGTMQVY-LTLFLPGSDLTDITPLGDY 128

Query: 186 VPL 178
           V L
Sbjct: 129 VHL 131


>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 521 GLNTLAMCSSFP-FLMKCSKRPKIICKQPN 435
           G+ ++A C   P  LM C+K  +I+C  PN
Sbjct: 263 GILSIAWCPQDPDLLMSCAKDNRILCWNPN 292


>SB_28772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
 Frame = +1

Query: 55  IIYNYYAKYNEVHDVYGESYH--HHRIVQEYLSESYVNDMSCIERDVTAMRRLKIGSCTF 228
           I + + + Y  +H ++  +Y   HH  +  YL+ S     +   R +T       GS T 
Sbjct: 165 IHHMFISTYQRIHHMFTSTYQQIHHMFISTYLNRSITCSPAHTNRSITCSSAHTNGSITC 224

Query: 229 DEA 237
             A
Sbjct: 225 SPA 227


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,190,931
Number of Sequences: 59808
Number of extensions: 451638
Number of successful extensions: 1358
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)