Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d16
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80033-4|AAC48198.2| 467|Caenorhabditis elegans Hypothetical pr... 33 0.25
AF099917-9|AAC68787.1| 445|Caenorhabditis elegans Hypothetical ... 29 2.4
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 29 3.1
AC006620-5|AAF39776.2| 328|Caenorhabditis elegans Hypothetical ... 29 3.1
Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr... 29 4.1
AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine re... 29 4.1
Z92831-6|CAB07365.2| 355|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical p... 28 5.4
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 28 5.4
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 28 5.4
AC024844-4|AAK29958.1| 421|Caenorhabditis elegans Hypothetical ... 28 5.4
U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical p... 28 7.2
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical... 28 7.2
AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical ... 28 7.2
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 27 9.5
U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical pr... 27 9.5
U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC024776-22|AAK68478.3| 701|Caenorhabditis elegans Hypothetical... 27 9.5
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 27 9.5
>U80033-4|AAC48198.2| 467|Caenorhabditis elegans Hypothetical
protein T23H2.4 protein.
Length = 467
Score = 32.7 bits (71), Expect = 0.25
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = -1
Query: 425 EISRSKLFKENICRPV*TRTLTGTTASICSNTLRTLSSMPVVSPVLNQ--WERLLMESPA 252
EI RS N+C P+ +SICS + +P S ++N+ E L SP
Sbjct: 204 EIRRSSKLS-NVCTPISCHF----RSSICSWQSTNIQLLP--SKIVNEAAGESTLTSSPV 256
Query: 251 SIILTASSKVQLPIFKRRIAVTSRSMHDI 165
+ + A S +QL +F + +VTS S +I
Sbjct: 257 RLPIDAPSFIQLQMFNSQGSVTSLSFRNI 285
>AF099917-9|AAC68787.1| 445|Caenorhabditis elegans Hypothetical
protein F54D10.9 protein.
Length = 445
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 520 PNSDAVGWWYNK-FCVITYVHRIMHRSVP 603
P +D WWYNK F V TY +++ R P
Sbjct: 307 PAADIGRWWYNKPFNVQTYFNKVTCRRAP 335
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +1
Query: 40 LAAKLIIYNYYAKYNE---VHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLK 210
L A + Y+ KY E VH V+ E Y I+ E++++ + + DV A ++++
Sbjct: 420 LLASELSYSIKRKYGENVEVHQVFEEKYPAEDILPEHIAQKSIEAIRKGGVDVRAEQKVE 479
Query: 211 -IGSCTFDEAVKMIDAGDSIKSLSHWFSTGE 300
+ C + +K+ D G +++ +TGE
Sbjct: 480 GVRKCCKNVVLKLSD-GSELRTDLVVVATGE 509
>AC006620-5|AAF39776.2| 328|Caenorhabditis elegans Hypothetical
protein C51G7.5 protein.
Length = 328
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Frame = +1
Query: 40 LAAKLIIYNYYAKYNE---VHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRLK 210
L A + Y+ KY E VH V+ E Y I+ E++++ + + DV A ++++
Sbjct: 152 LLASELSYSIKRKYGENVEVHQVFEEKYPAEDILPEHIAQKSIEAIRKGGVDVRAEQKVE 211
Query: 211 -IGSCTFDEAVKMIDAGDSIKSLSHWFSTGE 300
+ C + +K+ D G +++ +TGE
Sbjct: 212 GVRKCCKNVVLKLSD-GSELRTDLVVVATGE 241
>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
T20G5.1 protein.
Length = 1681
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/97 (19%), Positives = 42/97 (43%)
Frame = +1
Query: 28 DNMSLAAKLIIYNYYAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIERDVTAMRRL 207
D ++ L++Y Y + + +V+ + + R+ + + D+ C E + +
Sbjct: 781 DRHNMVHDLVLYLYRNQLQKYIEVFVQKVNAARLP---IVVGALLDVDCSEDAIKQLIIN 837
Query: 208 KIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDD 318
G DE V+ ++ + +K L+HW + G D
Sbjct: 838 TRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATD 874
>AC006617-5|AAF39775.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 65 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 594 SMHYSVHISYHTKFIVPPSDSVAIRVEHVGDVQQF 490
S HY I+Y T ++PPSD +A+ E + ++
Sbjct: 134 SWHYLFIIAYLTSTLIPPSDHLAVYNETLAHYPEY 168
>Z92831-6|CAB07365.2| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 456 NNLQAA-QHVLRNFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDARRFAGAEPM 280
+NL+A + + KIV + A + NHR D+LQ+F + A R A E
Sbjct: 18 SNLRAFNRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSL--AERKAAEERH 75
Query: 279 GKAFDGIARVYHLDR 235
KA + + R + D+
Sbjct: 76 NKAIEELKRSHKNDK 90
>Z92777-12|CAJ58496.1| 355|Caenorhabditis elegans Hypothetical
protein F22G12.1 protein.
Length = 355
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 456 NNLQAA-QHVLRNFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDARRFAGAEPM 280
+NL+A + + KIV + A + NHR D+LQ+F + A R A E
Sbjct: 18 SNLRAFNRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSL--AERKAAEERH 75
Query: 279 GKAFDGIARVYHLDR 235
KA + + R + D+
Sbjct: 76 NKAIEELKRSHKNDK 90
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -3
Query: 381 GLNAHAD---GNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYH 244
G N H D ++D+LQ D ++DAR + + + A + +YH
Sbjct: 636 GFNEHVDKLISGQQIDILQKVKDALIDARPSSAEDCIRWARNQFQELYH 684
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -3
Query: 381 GLNAHAD---GNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYH 244
G N H D ++D+LQ D ++DAR + + + A + +YH
Sbjct: 721 GFNEHVDKLISGQQIDILQKVKDALIDARPSSAEDCIRWARNQFQELYH 769
>AC024844-4|AAK29958.1| 421|Caenorhabditis elegans Hypothetical
protein Y65B4A.2 protein.
Length = 421
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 256 GDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVS 366
GD +K+L++W + G TG D R + VP S
Sbjct: 209 GDPLKALTYWVNQGLVTGGRDGCRPYSFDLSCGVPCS 245
>U80027-12|AAC48126.2| 493|Caenorhabditis elegans Hypothetical
protein T28A11.17 protein.
Length = 493
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 220 CTFDEAVKMIDAGDSIKSLSHWFSTGET 303
CT DE VKM+ D++K + WFS T
Sbjct: 337 CTQDE-VKMMGDSDAVKPIDGWFSENIT 363
>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
protein Y105C5B.2 protein.
Length = 1044
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 472 HFMRNGKLLHIANVFNPNSDAVGWWYNKFC 561
H R+GK +H+ANV SD G K C
Sbjct: 348 HMWRDGKAVHVANVKPRESDYCGGNMTKNC 377
>AF047655-1|AAC04402.1| 558|Caenorhabditis elegans Hypothetical
protein C17B7.8 protein.
Length = 558
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 220 CTFDEAVKMIDAGDSIKSLSHWFSTGET 303
CT DE VKM+ D++K + WFS T
Sbjct: 379 CTQDE-VKMMGDSDAVKPIDGWFSENIT 405
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/99 (21%), Positives = 40/99 (40%)
Frame = +1
Query: 154 YVNDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDDNVRKV 333
Y + + DV +LKI + E K + + + +SH G T G D +
Sbjct: 1834 YTDTQQSVNLDVQKSAKLKIEH--YQEETKNLFSSVQMLRISHMIKAGNTIGFDKVYHET 1891
Query: 334 LEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQ 450
+ + V + + L+N+ +E S+ +L L+
Sbjct: 1892 TQLLQCFAHSGVMYEAAWLLDYLSNY-KERSKHVLPLLK 1929
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/99 (21%), Positives = 40/99 (40%)
Frame = +1
Query: 154 YVNDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDDNVRKV 333
Y + + DV +LKI + E K + + + +SH G T G D +
Sbjct: 1851 YTDTQQSVNLDVQKSAKLKIEH--YQEETKNLFSSVQMLRISHMIKAGNTIGFDKVYHET 1908
Query: 334 LEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQ 450
+ + V + + L+N+ +E S+ +L L+
Sbjct: 1909 TQLLQCFAHSGVMYEAAWLLDYLSNY-KERSKHVLPLLK 1946
>U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical
protein T20D4.9 protein.
Length = 459
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 220 CTFDEAVKMIDAGDSIKSLSHWFS 291
CT DE VKM+ D++K + WFS
Sbjct: 303 CTQDE-VKMMGDSDAVKPIDGWFS 325
>U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical
protein F48E8.4 protein.
Length = 816
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 250 DAGDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQTGRQIFSLNNFERE 420
D + ++ L+H+ TGE + V ++ D +V + VR Q + ++ L F E
Sbjct: 399 DNDELVEGLTHFLKTGEIDLQSNLVIPAMDIYDEMVFIGVRDQPYKWLYDLYEFYHE 455
>AC024776-22|AAK68478.3| 701|Caenorhabditis elegans Hypothetical
protein Y41D4B.4 protein.
Length = 701
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 423 NFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVD 310
N K+++ L +G++ + D NH +L Q DVI +
Sbjct: 503 NVQAKLLKVHVLVNGVSRNPDANHTKELFQLLEDVITE 540
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/99 (21%), Positives = 40/99 (40%)
Frame = +1
Query: 154 YVNDMSCIERDVTAMRRLKIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDDNVRKV 333
Y + + DV +LKI + E K + + + +SH G T G D +
Sbjct: 1834 YTDTQQSVNLDVQKSAKLKIEH--YQEETKNLFSSVQMLRISHMIKAGNTIGFDKVYHET 1891
Query: 334 LEQIDAVVPVSVRVQTGRQIFSLNNFEREISQDMLGCLQ 450
+ + V + + L+N+ +E S+ +L L+
Sbjct: 1892 TQLLQCFAHSGVMYEAAWLLDYLSNY-KERSKHVLPLLK 1929
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,637,549
Number of Sequences: 27780
Number of extensions: 336066
Number of successful extensions: 1053
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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