Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d16
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    31   0.72 
At1g76070.1 68414.m08834 expressed protein                             31   0.95 
At4g16560.1 68417.m02505 heat shock protein-related contains sim...    29   2.9  
At2g40260.1 68415.m04952 myb family transcription factor contain...    29   2.9  
At4g17030.1 68417.m02569 expansin-related identical to SWISS-PRO...    28   5.0  
At1g69870.1 68414.m08041 proton-dependent oligopeptide transport...    28   5.0  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    27   8.8  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    27   8.8  
At2g32750.1 68415.m04007 exostosin family protein contains Pfam ...    27   8.8  

>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 58  IYNYYAKYNEVHDVYGESYHH-HRIVQEYLSESYVNDMSCIERDVTAMRRLKI 213
           ++ +YA+  + H   G+ Y   +++V E     YV D SCI +D++   + K+
Sbjct: 377 VHIFYAE-GKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKL 428


>At1g76070.1 68414.m08834 expressed protein
          Length = 272

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -2

Query: 679 NDHHNHFCSNE*IFS----PLPTNEAPIRRARFDALFCAHKLSHKIYC 548
           N+HHN+  +N+  FS    PL  N A +RR + DA++     S K+ C
Sbjct: 44  NNHHNYTAANKMFFSGPMVPLVPNAARVRRNKSDAVW-DEPTSPKVSC 90


>At4g16560.1 68417.m02505 heat shock protein-related contains
           similarity to SWISS-PROT:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 532

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -3

Query: 390 LPSGLNAHADGNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYHLDRFVKGATAD 211
           +P+G    ADG   V+LL HF  +I   RR    +P   AF G   + H    ++G    
Sbjct: 391 IPTGDAPVADGTPYVNLLAHFRGLIPKGRRC--TDPGDPAFTGPVVLPH-PSVLEGPMMP 447

Query: 210 LQTPHSGHVPLYAR 169
            +T    +  LY R
Sbjct: 448 YETKQLSNGGLYMR 461


>At2g40260.1 68415.m04952 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 410

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 211 IGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDDNVRK 330
           +G C  ++ VK  D    IKSLS   S+  ++ +D  +RK
Sbjct: 349 LGECLLEDEVKEHDDHQDIKSLSLSLSSSGSSKLDRTIRK 388


>At4g17030.1 68417.m02569 expansin-related identical to
           SWISS-PROT:O23547 expansin-related protein 1 precursor
           (At-EXPR1)[Arabidopsis thaliana]; related to expansins,
           http://www.bio.psu.edu/expansins/
          Length = 250

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +1

Query: 70  YAKYNEVHDVYGESYHHHRIVQEYLSESYVNDMSCIE---RDVTAMRRLK 210
           YA YN V+ ++ +SY+ H +    L    VND+  +E    D    RR++
Sbjct: 146 YAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMR 195


>At1g69870.1 68414.m08041 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 620

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 533 ASLLGLNTLAMCSSFPFL--MKCSKRPKIICKQPN 435
           A+LLGL T+ + +SFP L    C+ +  + C  PN
Sbjct: 132 ATLLGLITITLTASFPQLHPASCNSQDPLSCGGPN 166


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +1

Query: 187 VTAMRRLKIGSCTFDEAVKMIDAGDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVS 366
           V  + +    +C     +K +D GDS  SL  +      +G +DN +K  ++++ VV +S
Sbjct: 73  VLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKG-QKLNVVV-IS 130

Query: 367 VRVQTGRQ 390
            R+ +  Q
Sbjct: 131 ARIPSTAQ 138


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = +1

Query: 373 VQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNGKLLHIANVFN---PNSDAVGW 543
           ++TG +   ++ F  ++  D+  C     GR+      G + H  N FN    N++   W
Sbjct: 351 IKTGDKAPQVDEFFLKVMSDLTFCRNFQWGRYSFDYMLGTISHTVNHFNGSVTNNEKYIW 410

Query: 544 WYNKFCV 564
               FC+
Sbjct: 411 PVPGFCL 417


>At2g32750.1 68415.m04007 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 509

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 13  YHCLTDNMSLAAKLIIYNYYAKYNEVHDVYG 105
           Y CLT+N SLA+ + +  YYA ++    ++G
Sbjct: 164 YECLTNNSSLASAIYV-PYYAGFDVSRHLWG 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,436,611
Number of Sequences: 28952
Number of extensions: 301904
Number of successful extensions: 905
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)