Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d14
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.36
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.5
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 3.4
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 3.4
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.4
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme... 26 4.4
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.7
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 7.7
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 25 7.7
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 25 7.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.7
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 7.7
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 0.36
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -3
Query: 235 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 56
+A N +E ++ ND N N PT + VV ++E +ASN +++ + D
Sbjct: 24 QAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDA 83
Query: 55 MECLLKTTDNL 23
+T++N+
Sbjct: 84 STQSPETSENV 94
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Frame = +1
Query: 385 HDNNIFFIMPSKTNAVIIYLFKLDTEHPPTYNV----NAKTRLVSGYENSRPIN 534
HD +F + A +IY+F TE Y V T + + YE + P++
Sbjct: 769 HDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAYELNEPVD 822
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 232 ASFDNGYSE-FCDKQQPNDYLN 170
AS+D+ E +CDK P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +1
Query: 145 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 246
H WD C+ + + +V Y KT N + TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 94 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 213
K ++ S ++ C + +WDC + WA + LN
Sbjct: 71 KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 295 QTTMTQINFNASYTSAPTPSRASF 224
Q + + +FNA+ APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892
>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
Spe2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 106 LLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTAS 246
L Q++C++L D Y S S V HK + C TT AS
Sbjct: 61 LAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLAS 107
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 169 YYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDND 59
YY+ TP+ TVVS + T+ S AS + + + D
Sbjct: 568 YYHVKTPEKGTTVVSRTVTSPKSGAYASPSKASYNQD 604
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 21 PRLSVVLSKHSIISLSSVNELTLAKKFEAAAVSLSDTTV 137
P ++L KH I L+SVN+ + K + +D +
Sbjct: 67 PSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNI 105
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 199 DKQQPNDYLNYYNNPTPDGADTVVSD 122
D QPN YL Y NP D + D
Sbjct: 503 DLPQPNIYLTRYTNPPKSLLDNCILD 528
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -2
Query: 536 IFIGRLFSYPLTKRVFALTLYVGG-CSVSNL 447
+F GRL + P+ + FAL + +GG + SN+
Sbjct: 487 VFPGRLGTLPVFQNQFALPINIGGYANASNV 517
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 7.7
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = -3
Query: 298 NQTTMTQINFNASYTSAPTP-SRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGAD--TVV 128
+ T +T +N + +++ TP S S N + P +N + +V
Sbjct: 304 SSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVN 363
Query: 127 SDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSS 5
S + T+A+S L SVNS + + L +VSS
Sbjct: 364 STTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSS 404
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 250 APTPSRASFDNGYSEFCDKQQPNDYLNYYNNP-TPDGADTVVSDSETAAASNFLASVNSL 74
+P P +S D+ S N++L T D D+V+SDS T + VNSL
Sbjct: 290 SPPPGLSSMDSNGSSI-----ENNFLYTKRRANTSDSFDSVLSDSSTTPTISSSVQVNSL 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,397
Number of Sequences: 5004
Number of extensions: 41498
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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