Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d14
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_30299| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=8.1) 32 0.28
SB_27793| Best HMM Match : Alpha_GJ (HMM E-Value=7.6) 32 0.38
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 31 0.87
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_6982| Best HMM Match : Plasmodium_HRP (HMM E-Value=5.5) 29 3.5
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 28 4.6
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 6.1
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14) 27 8.1
SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 33.1 bits (72), Expect = 0.16
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Frame = -3
Query: 313 DTIVNNQTTM----TQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPD 146
DT +N+TT N S + + + DN + D N+ +Y N+PT D
Sbjct: 82 DTTSDNETTSDNDTNSDNDTTSDNDKTSDNDTTSDNDTTSDNDTTSDNNTTSY-NDPTSD 140
Query: 145 GADT----VVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDN 26
T SD++T + N S N DND KTTDN
Sbjct: 141 NDTTSDNDTTSDNDTTS-DNETTSDNDTNSDNDTTSDNDKTTDN 183
Score = 31.1 bits (67), Expect = 0.66
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Frame = -3
Query: 313 DTIVNNQTTM----TQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPD 146
DT +N+TT N S T + + DN + D N+ +Y N+ T D
Sbjct: 154 DTTSDNETTSDNDTNSDNDTTSDNDKTTDNDTTTDNDTTSDNDTTSDNNTTSY-NDTTSD 212
Query: 145 GADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDN 26
T S++ T + N S N T DND KTTDN
Sbjct: 213 NNKT--SNNNTTS-DNDTTSDNDTTFDNDTTTDNNKTTDN 249
Score = 30.3 bits (65), Expect = 1.1
Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Frame = -3
Query: 277 INFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDG---ADTVVSDSETAA 107
IN AS + + + DN + D ND NN T D AD +
Sbjct: 8 INDKASDNDTTSDNNTTSDNDTTSDNDTTSDND-TTADNNTTSDNDTTADNNTTSDNNTT 66
Query: 106 ASNFLASVNSLTDDNDIMECLLKTTDN 26
+ N S N T DND T+DN
Sbjct: 67 SDNDTTSDNDTTSDNDTTSDNETTSDN 93
Score = 29.1 bits (62), Expect = 2.6
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Frame = -3
Query: 313 DTIVNNQTTM----TQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPD 146
DT +N TT T N S + + DN + D +D +N T
Sbjct: 16 DTTSDNNTTSDNDTTSDNDTTSDNDTTADNNTTSDNDTT--ADNNTTSDNNTTSDNDTTS 73
Query: 145 GADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDN 26
DT SD++T + N S N DND KT+DN
Sbjct: 74 DNDTT-SDNDTTS-DNETTSDNDTNSDNDTTSDNDKTSDN 111
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Frame = -3
Query: 313 DTIVNNQTTMTQINFNASYTSAPTPSRASFDNGYSE--FCDKQQPNDYLNYYNNPTPDGA 140
DT NN T ++ T++ + + D + D +D NN T
Sbjct: 268 DTTTNNDTNSDNDTTTSNDTTSDNDTTSDNDTTTNNDTTSDNDATSDNDTTTNNDTTSDN 327
Query: 139 DTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDN 26
D SD++T + N + N T DND TTDN
Sbjct: 328 DAT-SDNDTTS-DNDTTTNNDATSDNDTTTDNDTTTDN 363
>SB_30299| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=8.1)
Length = 414
Score = 32.3 bits (70), Expect = 0.28
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = -3
Query: 322 IGGDTIVNNQTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDG 143
I VNN + +AS + S + G + FCD Q YL+ +N D
Sbjct: 296 ISHSKFVNNSKKSSVFEDSASSSIVSKRSSRTGQAGSASFCDSQ----YLS-RSNVKSDA 350
Query: 142 AD--TVVSDSETAAASNFLASVNSLTDDNDIMEC 47
+D +V+S + T AS+F++ N L+ ++EC
Sbjct: 351 SDRHSVLSKTTTLLASDFVSHQN-LSSSKPVLEC 383
>SB_27793| Best HMM Match : Alpha_GJ (HMM E-Value=7.6)
Length = 165
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = -3
Query: 313 DTIVNNQTTMTQINFNASYTSAPTPSR-ASFDNGYSEFCDKQQPNDY-LNYYNNPTP--- 149
DT +N T +N NA+ T+ T + + + ++ ND +N N T
Sbjct: 25 DTAMNTNANDTAMNTNANDTAMNTNANDTAMNTNANDTAMNTNSNDTAMNTNANDTAMNT 84
Query: 148 DGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTT 32
+ DT ++ + A N ++ ++ +ND++E ++KTT
Sbjct: 85 NANDTAMNTNANDTAMNTNSNDTAIQLNNDVLEIIIKTT 123
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 151 AWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 249
AW YN + ++W VVY KT + R L E
Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKERWRLAFTEE 1239
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 139 RLHPAWDCYNNSNSRWAVVYHKTL 210
RLH W C ++ S A++YH TL
Sbjct: 800 RLHHTWSCLHHQYSSSAIMYHSTL 823
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/90 (23%), Positives = 34/90 (37%)
Frame = -3
Query: 325 DIGGDTIVNNQTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPD 146
D+ D +N+ M N + DN ++ D ND +N N+ D
Sbjct: 18 DMNDDDDMNDDDDMNDDNDMNDDDDMNDDDDMNDDNDMNDDNDMNDDND-MNDDNDMNDD 76
Query: 145 GADTVVSDSETAAASNFLASVNSLTDDNDI 56
D ++D N + N + DDND+
Sbjct: 77 NDDNDMNDDNDMNDDNDMNDDNDMNDDNDM 106
>SB_25995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 6 ELTASPRLSVVLSKHSIISLSSVNELTLAKKFEAAAVSLSDTTVS 140
E+T SPR + ++ I++S V ++T++ +F+ TV+
Sbjct: 550 EITVSPRFQITVAPRFQITVSPVYQITVSPRFQITVTPRFQITVT 594
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 6 ELTASPRLSVVLSKHSIISLSSVNELTLAKKFEAAAVSLSDTTVS 140
E+T SPR + ++ I++S V ++T++ +F+ TV+
Sbjct: 752 EITVSPRFQITVAPRFQITVSPVYQITVSPRFQITVTPRFQITVT 796
>SB_6982| Best HMM Match : Plasmodium_HRP (HMM E-Value=5.5)
Length = 389
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = -3
Query: 313 DTIVNNQTTMTQINFNASYTSAPTPSR-ASFDNGYSEFCDKQQPNDY-LNYYNNPTP--- 149
DT +N T +N +A+ T+ T + + + ++ ND +N N T
Sbjct: 129 DTAMNTHANDTAMNTHANDTTMNTHANDTAMNTNSNDTAVNTNANDTAVNTNANDTAMNT 188
Query: 148 DGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTT 32
+ DT ++ A N ++ ++ +ND++E ++KTT
Sbjct: 189 NANDTAMNTHANDTAMNTNSNDTAIQLNNDVLEIIIKTT 227
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = -3
Query: 331 QVDIGGDTIVNNQTTM---TQINFNASY-TSAPTPSRASFD--NGYSEFCDKQQPNDYLN 170
+ DI GD + ++ T+ Y +PTP R + + + CD P LN
Sbjct: 434 KTDIFGDGFIGSENLTCHSTEFKVYGDYWVPSPTPYRLPGEKIDIFGVKCDLPDPPTKLN 493
Query: 169 YYNNP-TPDG 143
YNNP TP G
Sbjct: 494 DYNNPGTPAG 503
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/37 (29%), Positives = 26/37 (70%)
Frame = -3
Query: 139 DTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTD 29
+ ++++ +T++ + +N+LTD+N+ ++ LKTTD
Sbjct: 597 ENLLTEGKTSS-QKLQSKINTLTDENNSLKVRLKTTD 632
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 223 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 101
DNG C ++ D + + PTP G V SD AAS
Sbjct: 581 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 617
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 223 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAAS 101
DNG C ++ D + + PTP G V SD AAS
Sbjct: 218 DNG----CTTEETMDTMGFIIPPTPTGGHNVTSDKPVMAAS 254
>SB_51496| Best HMM Match : N2227 (HMM E-Value=5.3e-14)
Length = 248
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 202 CDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVN 80
C+ + PND + P D D S + + AA NFL N
Sbjct: 149 CNVRSPNDQIRPIKIPDTDPQDLPPSTNFSMAAGNFLEVYN 189
>SB_10367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 409 MPSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPI 531
MP ++ + +D +H P N NA+TR + E R +
Sbjct: 213 MPQTRGQKLLEMCGVDIQHQPPTNTNAQTRAKASTEKYRSL 253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,516
Number of Sequences: 59808
Number of extensions: 307996
Number of successful extensions: 843
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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