Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d14
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.93 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 13/66 (19%), Positives = 27/66 (40%)
 Frame = -3

Query: 301 NNQTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSD 122
           ++Q   +  N         +P+ AS ++  S         +Y   +N+P+P G+    S 
Sbjct: 14  HHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73

Query: 121 SETAAA 104
           S  + +
Sbjct: 74  SSASTS 79


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 437 MITALVLEGIIKKILLSCSPLGQYKLTFMLN 345
           ++TAL+  G +KK  L  S +   K+  M N
Sbjct: 336 LVTALIQRGTLKKGCLLVSGIASAKVRSMFN 366


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 118 ETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSS 5
           E A   + L + N + DD + + CL+   +   + +SS
Sbjct: 291 EKALQGDDLRTANIIADDPEGVSCLVIDRETFNQLISS 328


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = +3

Query: 222 SNDARDGVGALVYDALKLICVIVVWLFTIVSPPMSTCN*NNIQHERQFILP 374
           S D  + V  ++Y  L  +  +  +L T V+P +     N  +   + +LP
Sbjct: 314 SKDKPEDVLIIIYTILTYMSGVFYYLSTTVNPLLYNIMSNKFREAFKLMLP 364


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 439 YLFKLDTEHPPTYNVNAKTRLVSGYENSRP 528
           Y  K  TE PP+YN       +  +  S+P
Sbjct: 530 YDSKSSTETPPSYNQLNYNENIERFFKSKP 559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,542
Number of Sequences: 438
Number of extensions: 2993
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)