Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d14
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    30   0.94 
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    29   2.9  
At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) / tra...    29   2.9  
At1g79030.1 68414.m09215 DNAJ heat shock N-terminal domain-conta...    27   6.6  
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res...    27   6.6  

>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 15/125 (12%)
 Frame = -3

Query: 331  QVDIGGDTIVNNQTTMTQINFNASY-----TSAPTPSRASFDNGYSEFCDK-QQPNDYLN 170
            Q  IG + + NN   + Q +  A++     TS      A   N  S   D  ++ +D  N
Sbjct: 776  QGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKN 835

Query: 169  YYNNPTPDGADTVVSDSETAAASNFLA-----SVNSLTDDNDIMECL----LKTTDNLGE 17
               NP P GAD + SD +       LA        S +D+N          + +TDN G+
Sbjct: 836  DSTNPQPVGADDITSDGDKVDQGVVLAQQQRKDETSKSDENAKQSATDQNKVTSTDNEGD 895

Query: 16   AVSSA 2
            A  S+
Sbjct: 896  AGKSS 900


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 LHPAWDCYNNSNSRW 186
           L  AWDCY ++N RW
Sbjct: 423 LSTAWDCYMDANDRW 437


>At1g47870.1 68414.m05327 E2F transcription factor-2 (E2F2) /
           transcription factor E2Fc (E2Fc) identical to
           transcription factor E2Fc [Arabidopsis thaliana]
           GI:19578311; contains Pfam profile PF02319:
           Transcription factor E2F/dimerisation partner; identical
           to cDNA E2F transcription factor-2 E2F2 GI:10443850
          Length = 396

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
 Frame = -3

Query: 343 LFQLQVDIGGDTIVNNQTTMTQINFNASYTSAPTPSRASFDNGYSEFC-DKQQPND--YL 173
           +F  + DI       NQT +      ASY   P P   SF   Y      +  P D   L
Sbjct: 274 MFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDEMSFPQQYRMVIRSRMGPIDVYLL 333

Query: 172 NYYNNPTPDGADTVVSDSETAAASNF-LASVNSLTDDNDI 56
           + Y   + + +D + ++S+  A       S+  +T D D+
Sbjct: 334 SKYKGDSAETSDKLGNESDQKAPVGVDTPSLKIVTSDTDL 373


>At1g79030.1 68414.m09215 DNAJ heat shock N-terminal
           domain-containing protein / S-locus protein, putative
           similar to S-locus protein 5 (GI:6069485) [Brassica
           rapa]; contains Pfam profile PF00226 DnaJ domain
          Length = 416

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 88  SVNSLTDDNDIMECLLKTTDNLGE 17
           S+N     NDI+ CLL+  DNL E
Sbjct: 124 SINLAFLSNDILNCLLQWCDNLSE 147


>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
           responsive-to-antagonist 1, putative /
           copper-transporting ATPase, putative similar to ATP
           dependent copper transporter SP|Q9S7J8 [Arabidopsis
           thaliana]
          Length = 995

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 151 PDGADTVVSDSETAAASNFLASVNS 77
           PD A+ +++DSE  A +  L S+NS
Sbjct: 761 PDDAEELLADSEDMAQTGILVSINS 785


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,966
Number of Sequences: 28952
Number of extensions: 205254
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)