Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d13
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0112 + 5385660-5385821,5386337-5386876 31 1.1
08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720 30 1.4
06_01_0031 - 305457-305663,306248-306523,306824-307609 29 2.4
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 28 5.6
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 28 5.6
05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906 28 7.4
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971... 27 9.8
11_02_0080 - 8083069-8083668,8084563-8084748,8084796-8084852,808... 27 9.8
01_01_0297 - 2437487-2437777,2438088-2438123 27 9.8
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Frame = +1
Query: 352 NLFYCNTMIIQHENPKCPIEFTYPETDMQSACSALLK-NRNGQSVPPPIKSNLRPIACEI 528
+LF CN + + C Y + + S S LLK RN PP + S++ I
Sbjct: 34 SLFQCNGVCM------CLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRK 87
Query: 529 PLSHFKELVESNDFLLCFNLETSTMVKILSLKRI 630
PL LCFN + T+ I KR+
Sbjct: 88 PLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKRV 121
>08_02_1549 - 27808389-27808524,27809274-27809384,27811248-27811720
Length = 239
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 223 DVNIDSRSPKKTASA---TIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHEN 393
DVN+D R TA+ T NP P+ AG+ R FS FY + + H+N
Sbjct: 22 DVNLDLRLVHSTAAGRQHTAATRNPAPPLA--AAGDDRAFSCTYCRRRFYSSQALGGHQN 79
>06_01_0031 - 305457-305663,306248-306523,306824-307609
Length = 422
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Frame = +1
Query: 367 NTMIIQHENPKCP----IEFTYPETDMQSACSALLKN-RNGQSVPPPIKSNLRPIACEIP 531
NT+++ E KCP IE PE D + C A+ K G + + + A I
Sbjct: 227 NTVVVNKEQKKCPFSVKIEEIPPEEDNTAGCVAIRKAFALGNGKAKKKELSPQDAALLIQ 286
Query: 532 LSHFKELVESNDFLLCFNLETSTMVKILSLKRIFCIFQY 648
L++ L + L C K+ ++ +F Y
Sbjct: 287 LNYRAHLAHRSQVLRCLRDLAVAKAKLKEIRSLFYNISY 325
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 76 EETQKSDR*YKLESETGIPSRCICL 2
EE SD +KLE E+G PS C L
Sbjct: 817 EEANTSDHDHKLEIESGAPSSCFDL 841
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +1
Query: 403 PIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEIPLSHFKELVESND 567
P+ P TD S CS LK N V P I + CE+ L ND
Sbjct: 529 PVSILEPPTDEDSCCSGYLK--NDSQVMPSIDKQI--YGCELRYEQEVSLSSDND 579
>05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906
Length = 104
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 121 ENLIVYVPTDDDRLYI---DKKQFPKFNSVLVYRHEHDVNIDSRS 246
+N ++YV TDD +L I +FP+ LV+ E +++ S++
Sbjct: 39 DNAVMYVKTDDQKLVIGTLSADKFPQIQFDLVFDKEFELSHTSKT 83
>12_02_0439 +
19096711-19096713,19096819-19096893,19097037-19097111,
19097225-19097297,19097536-19097580,19098217-19098328,
19098794-19098866,19099178-19099222,19100216-19100271,
19100370-19100545,19101289-19101476
Length = 306
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 394 PKCPIEFTYPETDMQSACSALLKNRNGQSVPPPIKSNLRPIACEI 528
P C I + +D +S +KN NG++V P+ +L I+ E+
Sbjct: 10 PPCDISIAF--SDARSRKQIAVKNDNGRTVMVPVFQSLETISGEV 52
>11_02_0080 -
8083069-8083668,8084563-8084748,8084796-8084852,
8085010-8085092,8085388-8086012
Length = 516
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 500 AICDRLLVKFRCLILKSWWKAMTF--YYVSIWKRPPW*RYCR*NAFFAS 640
A+C L V F C+I + W+ + F YY S K+ W Y FA+
Sbjct: 415 AMCASLAVAFICIIAR--WEDLDFLLYYRSFTKKLMWFAYMATTTAFAT 461
>01_01_0297 - 2437487-2437777,2438088-2438123
Length = 108
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 289 LMPITEIGAGETRVFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPE 426
+M I +V L+ N + N + Q NPKCP +Y +
Sbjct: 24 IMGIVSEDVDTNKVSITQLSRNSKHINDTVFQTPNPKCPTTTSYAD 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,196
Number of Sequences: 37544
Number of extensions: 384450
Number of successful extensions: 1047
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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