Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d13
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_6711| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_37400| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)                28   7.6  
SB_325| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  

>SB_12388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 26/108 (24%), Positives = 53/108 (49%)
 Frame = +1

Query: 64  FAFPHNLVEPQSDVGNKLIENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSR 243
           + +PHN+   +  + +++ E+  +YV T D++ ++D   +P+   ++V       +I SR
Sbjct: 281 YCYPHNV--DREIIPSQISESTPIYV-TKDNQGFLDYSTYPE--RIMVG------DIRSR 329

Query: 244 SPKKTASATIVYWNPLMPITEIGAGETRVFSVLLTNNLFYCNTMIIQH 387
               T    IV+  P   IT++   +  VFS+ + +    CN  +  H
Sbjct: 330 MLHVTLYGAIVHVTP-KEITDVTNEQAHVFSMTVRDETGDCNIFVCDH 376


>SB_6711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 121 ENLIVYVPTDDDRLYIDKKQFPKFNSVLVYRHEHDVNIDSRSPKKTASATI 273
           +NL +Y P DDD LYI +      +++ +Y   +D N+    P  + + +I
Sbjct: 65  DNLSIYGPLDDDNLYIYEPL--DEDNLYIYEPPYDDNLSIYEPLDSDNLSI 113


>SB_37400| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
          Length = 385

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 396 GVFMLDDHSVAIKQVVGQEHAKNARFARTDFGDGH*RVPVHYGG--GRCFFWRSTVYINI 223
           GV +L +  V +  VVG    +N  + + DF  G     V YG   G    +R  ++I+ 
Sbjct: 63  GVALLIEDRVCVNCVVGDHFMEN--YNQNDFATGDSDSLVAYGRAPGVNILFRWRIFISF 120

Query: 222 MLVPV 208
            LVPV
Sbjct: 121 WLVPV 125


>SB_325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 508 RPIACEIPLSHFKELVESNDFLLCFNLETSTMVKILSLKRIFC 636
           RP  C+IP  H +E +     LL   +E ST  K LS   + C
Sbjct: 56  RPFCCQIPKLHKREEIAWAAVLLRGEIEGSTENKYLSPGNLNC 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,259,721
Number of Sequences: 59808
Number of extensions: 453219
Number of successful extensions: 1085
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)