Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d13
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical pr...    28   6.6  
L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protei...    28   6.6  
L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeo...    28   6.6  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z73899-7|CAA98077.1|  492|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z32681-1|CAA83608.1|  761|Caenorhabditis elegans Hypothetical
           protein F56F3.1 protein.
          Length = 761

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 418 YPETDMQSACSALLKNRNGQSVPPPIKSNLR 510
           Y E  +Q A +A ++  NGQ +PP +   LR
Sbjct: 476 YVENQLQEAVNAAIRANNGQQLPPQLHEQLR 506


>U28730-5|AAA68259.1|  470|Caenorhabditis elegans Hypothetical
           protein K10B2.2a protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 133 VYVPTDDDRLYIDKKQFPKFNSVLV 207
           VY+PT   R+  DKK FP F  V +
Sbjct: 173 VYIPTLAVRILNDKKNFPNFKGVAI 197


>Z98853-5|CAB57903.1|  290|Caenorhabditis elegans Hypothetical
           protein R08A2.5 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 328 VFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPETDMQ 438
           +FS+  ++ +  C  M + +++   P EF+Y  TD Q
Sbjct: 133 LFSLFKSDPVMRCFQMTVLNDSTSSPFEFSYLSTDSQ 169


>L19249-1|AAC37167.1|  303|Caenorhabditis elegans homeobox protein
           protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 427
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 30  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 59


>L14429-3|AAA28218.1|  305|Caenorhabditis elegans C.elegans homeobox
           protein 23 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 326 AFLACS*PTTCFIATL*SSSMKTPNVPLSLRIPK 427
           A  AC  PT+C  +T  S+ M +PN+P S  IP+
Sbjct: 32  ALQAC--PTSCIPST--STGMLSPNLPFSATIPR 61


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 134 CTCPQTTIGCTLTKNNFQN 190
           C CPQ    CT + NN QN
Sbjct: 178 CPCPQNQPACTCSTNNQQN 196


>Z73899-7|CAA98077.1|  492|Caenorhabditis elegans Hypothetical
           protein ZK829.9 protein.
          Length = 492

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
 Frame = +1

Query: 208 YRHEHDVNIDSRSPKKTASATIV-------YWNPLMPITEIGAGETRVFSVLLTNNLFYC 366
           + H+ D N ++ S +K  SAT V       +    M ++   A  T  F  +L N+ F+ 
Sbjct: 248 HHHKEDANNNNNSEEKADSATSVMHILKKPHLRKAMMLSVSAAILTLPFYPILQNSTFFF 307

Query: 367 NTMIIQHENPKCPIEFTYPETDMQSACSALL 459
             M +  +  +    F      + S CS L+
Sbjct: 308 TDMGVDMKTSQLASSFMMVVLTISSICSTLI 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,070,488
Number of Sequences: 27780
Number of extensions: 350811
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)