Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d13
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam prof...    29   2.7  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   3.5  
At3g28460.1 68416.m03556 expressed protein contains Pfam PF03602...    29   3.5  
At5g59680.1 68418.m07482 leucine-rich repeat protein kinase, put...    28   4.7  
At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase, pu...    28   4.7  

>At4g08550.1 68417.m01406 glutaredoxin-related contains Pfam profile
           PF04784: Protein of unknown function, DUF547, weak hit
           to PF00462: Glutaredoxin
          Length = 587

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 511 PIACEIPLSHFKELVES-NDFLLCFNLETSTMVKILSLKRIF 633
           P+ C  P    KEL+E+  DFL C  L      K+  + +IF
Sbjct: 544 PLRCFTPGEIDKELMEAARDFLRCGGLRVDLNAKVAEISKIF 585


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 243 STVYINIMLVPVH*HRIEFWKLFFVNVQPIVVCGHVHNQVFD*FVAYVALRFHQIVRKRK 64
           S   + I L P +     FW+++FV V PI              +   AL  H+++RKR 
Sbjct: 217 SLAALRIELCPAYMSEYCFWRIYFVLVHPIFSKHDALTLSTPQVLESRALLSHELLRKRN 276

Query: 63  K 61
           K
Sbjct: 277 K 277


>At3g28460.1 68416.m03556 expressed protein contains Pfam PF03602:
           Conserved hypothetical protein 95
          Length = 314

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 257 VFFGDRLSILTSCSCLYTSTELNFGNCFLSMY 162
           V +  R ++L SC CL   T+  FG   L++Y
Sbjct: 272 VEYPSRTTMLDSCGCLEKMTDRRFGRTHLAIY 303


>At5g59680.1 68418.m07482 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 882

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 298 ITEIGAGETRVFSVLLTNNLFYCNTMIIQHENPKCPIEFTYPETDMQSACSALLKNRNGQ 477
           I E+ A ETR F++LL   LF+    ++  +     I    P T     C+  L   N  
Sbjct: 283 IQELQANETREFNMLLNGKLFF--GPVVPPKLAISTILSVSPNTCEGGECNLQLIRTNRS 340

Query: 478 SVPP 489
           ++PP
Sbjct: 341 TLPP 344


>At4g28850.1 68417.m04123 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative contains
           similarity to xyloglucan endotransglycosylase XET2
           GI:8886867 from [Asparagus officinalis]
          Length = 292

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 634 KKCVSTTISSPWWTFP 587
           K+CV  TI S WWT P
Sbjct: 232 KQCVDPTIRSNWWTSP 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,610
Number of Sequences: 28952
Number of extensions: 315828
Number of successful extensions: 962
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)