Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d12
         (316 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   2.3  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   3.1  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   4.0  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    19   9.4  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    19   9.4  

>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 315 FFFL-YNLIYSIIGTIKLMHINFL 247
           FF + Y L+YSI+G +    + F+
Sbjct: 359 FFVVDYTLLYSIVGAVTTYLVIFI 382


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 306 LYNLIYSIIGTIKLMHINF 250
           L ++ YS IGT+    +NF
Sbjct: 315 LCDVCYSTIGTVSWCELNF 333


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 233 CGSANYQRQHLRQH 192
           CG A  ++ HLR H
Sbjct: 113 CGKAFRRQDHLRDH 126


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 8   CIVEGLSQARIPH 46
           C+VEG     +PH
Sbjct: 484 CVVEGNPHCWVPH 496


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = -2

Query: 315 FFFLYNLIYSIIGTIKLMHINFLNASILRKRKLS 214
           F+ +Y   Y+I+      ++ ++  ++   +KLS
Sbjct: 39  FYKIYKYTYNIVAVSLTAYMVYITTNLRITQKLS 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,688
Number of Sequences: 336
Number of extensions: 1205
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)