Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d12
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   2.7  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   2.7  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    24   4.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   6.3  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        23   8.3  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    23   8.3  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    23   8.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    23   8.3  
SPBC13G1.02 |||mannose-1-phosphate guanyltransferase |Schizosacc...    23   8.3  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 303  YNLIYSIIGTIKLMHINFLNASIL-RKRKLSKTAFT 199
            Y+LI  + GT K   I+ L  S+L +K+K+  T+FT
Sbjct: 950  YSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFT 985


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 229 EAQIIKDSIYDNTVLLNRDVFLNILKFANDVF 134
           E+ IIK S+  N  L  RD+F  ++K     F
Sbjct: 655 ESPIIKRSLIRNNRLKGRDLFSELVKITESSF 686


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 163  NILKFANDVFDNKAYMYVDDSEVSRYYNAVVKM 65
            +++KF    FDN   +Y++D +++  Y+ V K+
Sbjct: 1051 SVIKFCVVDFDNNRVVYLNDEDIT--YDVVEKL 1081


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 208  SIYDNTVLLNRDVFLNILKFANDVFDN 128
            SI    V L  D FLN++ F  ++FD+
Sbjct: 3752 SISRTQVDLTNDEFLNLMNFVLNLFDS 3778


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 207 AFTTTQCC*TEMF 169
           AFTTT CC  E+F
Sbjct: 122 AFTTTWCCMFELF 134


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 163 NILKFANDVFDNKAYMYVDDSEVSRYYNAV 74
           N L  +N++FD   Y +  D+  SR+  AV
Sbjct: 529 NSLGSSNEIFDIDTYNHSIDNSGSRFTEAV 558


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 233 CGSANYQRQHLRQHSVAEQRCFFKYFKVC 147
           CGSA+  ++ LR     E+R    + + C
Sbjct: 385 CGSASIYKEKLRHKPSQEERLCLDFLEKC 413


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 218 NLRFRSIDA-FKKLMCINFIVPIIE*IRLYRKKK 316
           NL   +ID  FK+   I   VPI++ ++LY  KK
Sbjct: 667 NLIEMAIDIYFKEQAFIEIFVPIMDMLQLYSLKK 700


>SPBC13G1.02 |||mannose-1-phosphate guanyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 8   CIVEGLSQARIPHVDDKPFHFYHSI 82
           C+VE  S  R+ H  DKP  +  +I
Sbjct: 156 CLVEEPSTGRVLHYVDKPSSYLSNI 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,194,538
Number of Sequences: 5004
Number of extensions: 19615
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)