Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d12
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 3.1
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 26 5.4
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 26 5.4
02_05_0869 - 32344821-32344916,32345255-32345347,32345418-323455... 26 5.4
03_01_0414 + 3183292-3183735,3184547-3184969,3185435-3185535,318... 26 7.1
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 25 9.4
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 121 YMYVDDSEVSRYYNAVVKMKRLVINVRDPSLRQSLYN 11
Y+Y+ +SEVS+ Y ++ R VI V S+ SLY+
Sbjct: 1012 YLYILESEVSQDYQSMA--SRQVIEVPSTSVGGSLYS 1046
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 244 RVDTAEAQIIKDSIYDNTVLLNRDVFLNILKFANDVFD-NKAYMYVDDSEVSRYYNAVVK 68
++ + +++ + + VL V++ I K + + D N++Y Y DD + + V
Sbjct: 718 KIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAI 777
Query: 67 MKRLVINVRDPSLRQSLYN 11
K ++ D + +++Y+
Sbjct: 778 TKNPCLHPGDIRVLEAIYD 796
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 187 LLNRDVFLNILKFANDVFDNKAYMYVDDSEVS 92
++ D++ N LK+ N+ F+ + + DD EVS
Sbjct: 206 VIKEDLWPNPLKYFNNEFEEELELLDDDDEVS 237
>02_05_0869 -
32344821-32344916,32345255-32345347,32345418-32345551,
32345863-32346013,32346337-32346407,32346683-32346828,
32347172-32347221,32347552-32347628,32347716-32347776,
32347859-32347912,32347999-32348058,32348491-32348624,
32349740-32350418
Length = 601
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -1
Query: 163 NILKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 56
N+ KF NDVFD + +++ SEVS+ N VK + L
Sbjct: 520 NVEKFVNDVFDIMSPLFL--SEVSKKLN--VKQEEL 551
>03_01_0414 +
3183292-3183735,3184547-3184969,3185435-3185535,
3186178-3187439,3187625-3187665,3187777-3187845,
3187975-3188075,3188413-3188491,3188570-3188668,
3188757-3188825,3188918-3188967,3189211-3189387,
3189496-3189634
Length = 1017
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 145 NDVFDNKAYMYVDDSEVSR 89
NDV +NK Y YV+DS R
Sbjct: 544 NDVSNNKQYNYVEDSFARR 562
>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = -1
Query: 274 NKIDAHQFFERVDTAEAQIIKDSIYDNTVLLNRDVFLNILKFANDVFDNKAYMYVDDSEV 95
+K++A+ ER+D +I+ + VLL R++FL + K+A + + ++D E
Sbjct: 1099 DKVEANP--ERMD----KIVSNYNEKMVVLLVREMFLEVSKYAQVAGEARLSREMEDMED 1152
Query: 94 SRYYNA 77
S Y A
Sbjct: 1153 SLVYKA 1158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,877,575
Number of Sequences: 37544
Number of extensions: 100835
Number of successful extensions: 210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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