Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d12
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              33   0.049
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   1.8  
SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.6  
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)             26   7.4  
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          25   9.8  
SB_20722| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 33.1 bits (72), Expect = 0.049
 Identities = 17/63 (26%), Positives = 33/63 (52%)
 Frame = -1

Query: 247  ERVDTAEAQIIKDSIYDNTVLLNRDVFLNILKFANDVFDNKAYMYVDDSEVSRYYNAVVK 68
            E    AE +I ++   ++ V ++ +V L+  +F ND+ DN AY  V +  +  Y++    
Sbjct: 1088 EEAMLAEIEIEEEDSSEHEVYMDENVVLHAARFVNDIIDN-AYDIVKEEMIHDYFHPSSN 1146

Query: 67   MKR 59
             +R
Sbjct: 1147 RRR 1149


>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 683

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 157 LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRLVINVR 41
           L F+   F   A +   D  V  Y+N  +K+ RL++N+R
Sbjct: 53  LTFSFKTFLKDALLIYQDDGVMDYFNLELKVGRLLLNIR 91


>SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/95 (23%), Positives = 42/95 (44%)
 Frame = -1

Query: 289 FNNRNNKIDAHQFFERVDTAEAQIIKDSIYDNTVLLNRDVFLNILKFANDVFDNKAYMYV 110
           +NN +NK  ++   ++  T+   + K + + N V      + N+        DNKA  Y 
Sbjct: 130 YNNVDNKATSYNNVDKKATSYNNVDKKATFYNNVDKKATSYNNV--------DNKATSYN 181

Query: 109 DDSEVSRYYNAVVKMKRLVINVRDPSLRQSLYNTI 5
           +  + + +YN V K      NV +   + + YN +
Sbjct: 182 NVDKKATFYNNVDKTATFYNNVDN---KATFYNNV 213


>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 761

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 127 KAYMYVDDSEVSRYYNAVVKMKRLVINVR 41
           K+Y++ DD+EVS     VVK  R  +  R
Sbjct: 30  KSYIFGDDNEVSALATCVVKAMRRAMTQR 58


>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2032

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 194  VVVNAVFDNLRFRSIDAFKKLMCINFIVPI 283
            VV       L  RS+ +FK+L  +N +VPI
Sbjct: 1972 VVTGGNSGRLGIRSLHSFKQLRSMNLLVPI 2001


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 196 NTVLLNRDVFLNILKFANDVFDNKAYMYVDDSEVSRYYNA 77
           +T+L   D +L I+  +  +     Y Y+ D  + + YNA
Sbjct: 228 STLLPMEDAYLGIMARSASLSPGNHYTYIMDGSLPKLYNA 267


>SB_20722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 18  RDCLKLGSRTLMTSLFIFTT 77
           RDCLKL S    +S F+F T
Sbjct: 82  RDCLKLSSNMAHSSSFLFGT 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,518,621
Number of Sequences: 59808
Number of extensions: 137811
Number of successful extensions: 359
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)