Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d12
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      27   2.1  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    27   2.1  
Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical ...    27   3.8  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    26   5.0  
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    25   8.7  

>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 199 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 56
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 199 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 56
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 323 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 369


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 199 DNTVLLNRDVFLNI-LKFANDVFDNKAYMYVDDSEVSRYYNAVVKMKRL 56
           D+TV    +VF N  LK  ND  ++  +++ D+  V+RY   ++  KRL
Sbjct: 310 DSTVTYATNVFNNTRLKELND--NHSYFLFSDNGTVNRYGAEIIMRKRL 356


>Z74473-4|CAA98953.1|  390|Caenorhabditis elegans Hypothetical
           protein F56H9.4 protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 292 LFNNRNNKIDAHQFFERVDTAEAQIIKDSIYD 197
           L NN+N KI  H      DTA  Q++ D ++D
Sbjct: 348 LNNNKNRKIYQH-VTSATDTARIQVVIDMLFD 378


>AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical
           protein T22B2.1 protein.
          Length = 955

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 295 YLFNNRNNKIDAHQFFERVDTAEAQIIKD 209
           +LFN   N I A + F+R++ ++  +I++
Sbjct: 362 FLFNLLGNMITAKKMFQRIEPSQLNVIRE 390


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 127 KAYMYVDDSEVSRYYNAVVKMKR 59
           K Y  + D+E  R++NA++++KR
Sbjct: 115 KEYRMMSDNERQRWHNALIQLKR 137


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -1

Query: 139 VFDNKAYMYVDDSEVSRYYNAVVKMKRLVINVRDPSLRQSLYNTI 5
           +FD+  Y+Y D  ++ +Y + + +M  L   V++  +  ++ N +
Sbjct: 394 LFDDLHYLYCDGLKIDKYSSRMGEMMCLHTEVQNADMSSTIKNIL 438


>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 292 LFNNRNNKIDAHQFFERVDTAEAQIIKDSIYDNTVLLNR 176
           +F +  N++DAH  F +     A ++   IY+ T+ + R
Sbjct: 95  MFKDNANEMDAHMCFIKNSVFRAAVVMQFIYNCTMSVFR 133


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -1

Query: 139 VFDNKAYMYVDDSEVSRYYNAVVKMKRLVINVRDPSLRQSLYNTI 5
           +FD+  Y+Y D  ++ +Y + + +M  L   V++  +  ++ N +
Sbjct: 404 LFDDLHYLYCDGLKIDKYSSRMGEMMCLHTEVQNADMSSTIKNIL 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,585,045
Number of Sequences: 27780
Number of extensions: 110024
Number of successful extensions: 350
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)