Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d12
         (316 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57570.1 68416.m06410 expressed protein                             27   3.5  
At5g55490.1 68418.m06911 expressed protein                             26   4.6  
At3g58980.1 68416.m06574 F-box family protein contains two F-box...    26   4.6  
At2g32350.1 68415.m03954 ubiquitin family protein contains INTER...    25   8.1  
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put...    25   8.1  

>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 197 VVNAVFDNLRFRSIDAFKKLMCINFIVP 280
           +  AVF  L+ +S D+F   MC++ ++P
Sbjct: 382 IFKAVFFKLQSQSGDSFSDTMCMDVVIP 409


>At5g55490.1 68418.m06911 expressed protein
          Length = 537

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 232 AEAQIIKDSI-YDNTVLLNRDVFLNILKFANDVFDNKAYMYVDDSE 98
           A AQ++  ++ Y +  +LN  + L ++   ND+   K   Y +D+E
Sbjct: 441 ASAQLLHAALSYRDYEVLNHQILLRLVDKVNDMQSKKELSYDEDTE 486


>At3g58980.1 68416.m06574 F-box family protein contains two F-box
           domains Pfam:PF00646
          Length = 594

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = -1

Query: 217 IKDSIYDNTVLLNRDVFLNILKFANDVFDNKAYMYVDDSEV--SRYYNAVVKMKRL-VIN 47
           + D++ D+  ++N D  + +      + D+K + YVDD++   S   N +  ++ + ++N
Sbjct: 236 LSDAVPDDYPIVNLDSLVEVKLDLTLMVDHKYHGYVDDNDTISSNPTNLINGLRNVEIMN 295

Query: 46  VRDPSLRQS 20
           ++ P+  Q+
Sbjct: 296 LQSPNTFQA 304


>At2g32350.1 68415.m03954 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 233

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -1

Query: 271 KIDAHQFFERVDTAEA-QIIKDSIY--DNTVLLNRDVFLNILKFANDVFDNKAYMYVDDS 101
           K  + QF   VD  E    +KD I+  +NT +    ++ + ++ A+D  +   Y   + S
Sbjct: 80  KFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFS 139

Query: 100 EVSRYYNAVVKMK 62
           E+  +  ++ + K
Sbjct: 140 EIVVFLKSINRAK 152


>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
          Length = 865

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 157 LKFANDVFDNKAYMYVDDS 101
           ++F +DV+D K Y Y D+S
Sbjct: 179 IRFPDDVYDRKWYPYFDNS 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,923,382
Number of Sequences: 28952
Number of extensions: 92383
Number of successful extensions: 238
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)