Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d10
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0542 - 11352655-11352759,11353320-11353496,11353589-113536...    31   0.97 
05_01_0122 - 842013-842163,842439-843168,844307-844505                 28   6.8  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    27   9.0  
01_07_0371 - 43128880-43129968                                         27   9.0  

>02_02_0542 -
           11352655-11352759,11353320-11353496,11353589-11353699,
           11355606-11355667,11355739-11355941,11357109-11357281
          Length = 276

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 297 RAVMTASMRMIAPAFFTSTSRHFSKARGFIPLLILST 187
           + V   + R+I   +F S  RH+ +  G++P ++ ST
Sbjct: 159 KCVQQGASRVIVSPYFLSPGRHWKQVDGYLPYVLFST 195


>05_01_0122 - 842013-842163,842439-843168,844307-844505
          Length = 359

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 200 RSGIKPRAFEK*RDVDVKNAGAIILIDAVMTARILDLGVCCNYHRRD 340
           R G+     E   DVD+KN G +++++      + ++G+  +  R D
Sbjct: 189 REGMALNCLEAPLDVDIKNGGRVVVLNTANLPMVKEVGLGADLVRID 235


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +3

Query: 414 LEHNYTREIVRLMTN----LPVPFNRNALSHSC 500
           L H Y    VR M +    LP+P N+N LS SC
Sbjct: 408 LFHEYISTKVRDMASHGEYLPIPLNQNLLSQSC 440


>01_07_0371 - 43128880-43129968
          Length = 362

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 191 DNIRSGIKPRAFEK*RDVDVKNAGAIILIDAVMTARILDLGVCCNYHRRD 340
           D  R G+     E   DVD+KN G +++++      + ++G+  +  R D
Sbjct: 185 DKDREGMVLNCLEAPLDVDIKNGGRVVVLNTQNLPLVKEVGLGADLVRID 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,330
Number of Sequences: 37544
Number of extensions: 310340
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)