Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d08
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_35183| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=3.9)             27   5.4  
SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)             27   5.4  
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)           27   9.5  

>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 205 CCWSLSHLSFSCFLWVSSSLSQLQAKAIYF*PFSTYYVFIY 83
           CC   SH++FS F    S    +   A+ F PF  Y+++ Y
Sbjct: 808 CCAENSHVAFSEFFQARSHRLTVLNNAVSF-PFVKYFIYEY 847


>SB_35183| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=3.9)
          Length = 231

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 280 NFLSYWM-MTERMTL-KNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAIYF 116
           ++L+Y+  +T  M+L ++YL  F Y     SL+    + F +V+S +S  Q  + YF
Sbjct: 23  HYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYSTYF 79



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 280 NFLSYWM-MTERMTL-KNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAIYF 116
           ++L+Y+  +T  M+L ++YL  F Y     SL+    + F +V+S +S  Q    YF
Sbjct: 6   HYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYF 62



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 280 NFLSYWM-MTERMTL-KNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAIYF 116
           ++L+Y+  +T  M+L ++YL  F Y     SL+    + F +V+S +S  Q  + YF
Sbjct: 40  HYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYF 96


>SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)
          Length = 409

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 280 NFLSYWM-MTERMTL-KNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAIYF 116
           ++L+Y+  +T  M+L ++YL  F Y     SL+    + F +V+S +S  Q  + YF
Sbjct: 214 HYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYSTYF 270



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 280 NFLSYWM-MTERMTL-KNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAIYF 116
           ++L+Y+  +T  M+L ++YL  F Y     SL+    + F +V+S +S  Q    YF
Sbjct: 180 HYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYF 236



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 280 NFLSYWM-MTERMTL-KNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAIYF 116
           ++L+Y+  +T  M+L ++YL  F Y     SL+    + F +V+S +S  Q    YF
Sbjct: 197 HYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYF 253



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 280 NFLSYWM-MTERMTL-KNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAIYF 116
           ++L+Y+  +T  M+L ++YL  F Y     SL+    + F +V+S +S  Q  + YF
Sbjct: 231 HYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYF 287


>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
          Length = 293

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 310 MSWMMKMNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWS 194
           ++W+   N+MN +++    +     + L+N+ YYH  WS
Sbjct: 181 ITWLTPPNMMNSVTWLTPEDPRPASDNLVNYVYYH--WS 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,524,533
Number of Sequences: 59808
Number of extensions: 111426
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)