Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d08
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    28   2.7  
AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical ...    28   2.7  
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF003389-8|AAC71131.1|  214|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC024876-6|AAS80337.1|  181|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = -2

Query: 307 SWMMKMNVMNFLSYWMMTERMTLKNYLMN-----FHYYHCCWSLSHLSFSCFLWVSSSLS 143
           SW    NV N  S++      T+ N L++      + Y C   +    +S  +W+  S  
Sbjct: 181 SWFFDPNVGNDPSFYHNIPH-TINNLLVSASSTPLYIYLCYHLIFKFGYSTSMWLYRSKQ 239

Query: 142 QLQAKAIYF*PFSTYYVFIYV 80
           Q+  +A+    F     +IYV
Sbjct: 240 QIVIQAVILCSFHAVAAYIYV 260


>AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical
           protein C29G2.4 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -2

Query: 301 MMKMNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWSLSH-LSFSCFLWVSSSLSQLQAKA 125
           M+  N   +L+Y  +    TL   L    Y+H C+ L     +S  +W+  S  Q+ A+ 
Sbjct: 189 MIGNNPKIYLNYTTVVNN-TLSTVLTTGMYFHLCYYLIFKFGYSTSMWLYKSKRQIIAQG 247

Query: 124 IY--F*PFSTYYVFIYV 80
           I   F   ST  ++ YV
Sbjct: 248 IILTFFHASTSIIYEYV 264


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 211 YHCCWSLSHLSFSC 170
           YHCCW+ ++ S  C
Sbjct: 134 YHCCWNTAYCSVEC 147


>AF003389-8|AAC71131.1|  214|Caenorhabditis elegans Hypothetical
           protein F23H11.1 protein.
          Length = 214

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 211 YHCCWSLSHLSFSC 170
           YHCCW+ ++ S  C
Sbjct: 160 YHCCWNTAYCSVEC 173


>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = -2

Query: 220 FHYYHCCWSLSHLSFSCFLWVSSSLSQLQAKAI 122
           +H+Y CCW++S   +   + + ++++ ++  AI
Sbjct: 163 YHFYMCCWNISSNLWPINILLCTAINIMEIPAI 195


>AC024876-6|AAS80337.1|  181|Caenorhabditis elegans Hypothetical
           protein Y94H6A.10 protein.
          Length = 181

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 364 SPNKSPLKDRRDADREKIRDRSPTGEKK 447
           S +KSPLKD  D+ R  IR +  T  +K
Sbjct: 32  SKSKSPLKDGPDSQRSNIRRKLTTQMQK 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,505,024
Number of Sequences: 27780
Number of extensions: 91544
Number of successful extensions: 312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)