Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d08
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20270.1 68418.m02413 expressed protein contains Pfam domain,...    29   1.5  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    27   7.7  

>At5g20270.1 68418.m02413 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 332

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 292 MNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWSLSHLSFSCFLWVSSSLS 143
           M     +SY  + E M    Y++N  YY   WS+    FS F + + SL+
Sbjct: 51  MKRRELMSYCELPEYMKDNEYILN--YYRADWSIRDAFFSVFSFHNESLN 98


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -2

Query: 250 RMTLKNYLMNFHYY----HCCWSLSHLSFSCFLWVSSSLSQ 140
           R  L  + ++F YY    +   S+S+LSF C++W  S  +Q
Sbjct: 223 RFFLIVFFLSFTYYIVPGYLFPSISYLSFVCWIWTRSVTAQ 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,071,633
Number of Sequences: 28952
Number of extensions: 81436
Number of successful extensions: 238
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)