Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d07
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 30 0.33
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 28 1.0
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 28 1.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 3.1
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 26 4.1
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 4.1
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 26 4.1
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 5.4
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 25 7.1
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 7.1
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 9.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 25 9.4
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 9.4
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 29.9 bits (64), Expect = 0.33
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Frame = +2
Query: 116 AEFGKVFKNKIFVNINNYGCVLAGSAGFLFDDAYVDWNGVRMCAAPRLDNNMHPFRLYLL 295
A++GK+ K K F+ + G ++ +G +F DW P+L LY
Sbjct: 59 AKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKLK------ALYQD 112
Query: 296 GEDMAKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTRKP 475
+ F + N +P PS T ++ ++ ++ L L + Y + K RKP
Sbjct: 113 NYSLV-IFSNQNGIPRKPSAGHTFQMK-----IRAIFESLDLPIVLYAAILKDKF--RKP 164
Query: 476 -NDIFNEIDKELNG--NCPFIKFI 538
++N K++N + FIK++
Sbjct: 165 LTGMWNSFLKDVNRSIDLSFIKYV 188
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 425 KLKYT-VVNSTKIVTRKPNDIFNEIDKELNGNCPFIKFIQRD 547
K+ +T N KI+ ++ + ++ EL GN PFI F D
Sbjct: 242 KVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDAD 283
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 206 DDAYVDWNGVRMCAAPRLD 262
DDA++DWN +R C+A LD
Sbjct: 384 DDAFMDWN-LRKCSAAALD 401
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -1
Query: 153 TNILFLNTLPNSAYRKAIILRGLDVN-RFVAYTCV 52
TNI+ N LP S++ K ++L+ L+ N +FV + V
Sbjct: 340 TNIIIENILP-SSFSKPVVLKALNGNDKFVCFLTV 373
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 299 EDMAKHFVDNNILPPHPSNAKTRKINNSMFM 391
E KH + NI PS K + +N+S+F+
Sbjct: 71 ESATKHSIFVNICVHEPSKVKNKLLNSSLFI 101
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 320 VDNNILPPHPSNAKTRKINNSMFMLKNFYKGL 415
V N+ PP P+N T N+ K FYK L
Sbjct: 138 VFNSCSPPKPTNPITIIDNDKTHSFKKFYKSL 169
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +2
Query: 233 VRMCAAPRLDNNMHP----FRLYLLGEDMAKHFVD--NNILPP 343
+RMC+A R D +H L +L H V+ N+ILPP
Sbjct: 87 IRMCSAARTDKGVHAIVNVLGLKVLDNQPLPHVVNLVNDILPP 129
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 281 RLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFML 394
R+ L G+D +K + N LP HP + ++S L
Sbjct: 79 RVKLFGKDKSKASMSTNDLPSHPRSQSVMGFSSSTSQL 116
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 359 KTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIV 463
K KINN F L + YK LP + +VN+ +++
Sbjct: 91 KKEKINNCSFRLGSIYK-LPFPDNTFDIVNTHQVL 124
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 7.1
Identities = 6/14 (42%), Positives = 12/14 (85%)
Frame = +3
Query: 198 FCSTTRTWIGMVCE 239
+CS++ TW+G +C+
Sbjct: 156 YCSSSGTWVGKICK 169
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
Frame = +2
Query: 278 FRLYLLGEDMA---KHFVDNNILP---PHPSNAKTRKI---NNSMFMLKN 400
++L LLG+ +A KH + N P PS+++ ++ NNS+F+LKN
Sbjct: 343 YQLLLLGKQVAMEVKHLMFPNDKPLEMEFPSSSQPQQTVPTNNSLFLLKN 392
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 86 NPRKMMAFLYAEFGKVFKNKIFVNIN 163
NP K+ L+A+F F+N I N N
Sbjct: 1485 NPHKIDTSLFAKFSSQFQNIIAKNFN 1510
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 425 KLKYT-VVNSTKIVTRKPNDIFNEIDKELNGNCPFIKF 535
K+ +T N KI+ + ++ EL GN PFI F
Sbjct: 237 KVSFTGSTNVGKILMGQSASTIKKVSMELGGNAPFIVF 274
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 453 VLFTTVYFNLNSGRPL*KFFSINIELLILRVF-ALEGCGGSILL 325
+ F V+F+ N RP+ S NI F GCG S +L
Sbjct: 443 IQFDNVHFSYNPNRPILNGCSFNIPAGAKVAFVGASGCGKSTIL 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,780
Number of Sequences: 5004
Number of extensions: 56832
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -