Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d07
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0122 + 20990754-20991263,20992635-20992748                       29   3.2  
07_03_1002 - 23229298-23231471,23235866-23237777                       29   4.2  
04_04_1066 - 30533114-30533185,30533507-30533614,30533716-305340...    28   7.4  
04_01_0296 + 3927741-3927960,3928257-3928900                           28   7.4  
03_01_0579 - 4274927-4274998,4275320-4275427,4275529-4275904,427...    28   7.4  
01_01_0527 + 3867621-3867764,3867855-3868128,3868216-3868315,386...    28   7.4  
06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203...    27   9.7  

>09_06_0122 + 20990754-20991263,20992635-20992748
          Length = 207

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = -2

Query: 344 AAVVYYYRQSA*PCPRPVD-------TIGTDACCYLIAAPHTFAHHSNPRTRRRTKNRHC 186
           A+  Y+ +Q   P P P+D         G D C    AAP       + R RR  KNR  
Sbjct: 76  ASASYHQQQHHLPAPAPLDGAILPARRFGLDMCAAAAAAPAGVPAAGDRRKRRMIKNRE- 134

Query: 185 PLTRSRS 165
              RSR+
Sbjct: 135 SAARSRA 141


>07_03_1002 - 23229298-23231471,23235866-23237777
          Length = 1361

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 44  KPGTHVYATNL-FTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLAGSAGFLFD 208
           KP  HV+A  L   +NP         EFG +  N + V++N+   + A +AG+  D
Sbjct: 150 KPSNHVFAVELDIITNP---------EFGDIDSNHVGVDVNSLRSLQAKTAGYYVD 196


>04_04_1066 -
           30533114-30533185,30533507-30533614,30533716-30534091,
           30534173-30534330,30534416-30534536,30534613-30534831,
           30534923-30535022,30535254-30535383,30535474-30535617
          Length = 475

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 560 AQFPPDLLDLLNEYMTKSSIMKI 628
           A+ PPD + LLN+Y+ + +I+ I
Sbjct: 54  AEIPPDAIPLLNQYLQEGNIVYI 76


>04_01_0296 + 3927741-3927960,3928257-3928900
          Length = 287

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +2

Query: 239 MCAAPRLDNNMHPFRLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYK-GL 415
           + A P +D N      YL+   + KH VD +++   P       + N+ + L NF+K  +
Sbjct: 140 LAACPCIDKN------YLVQGHILKHGVDGSLIYFFPGCTNEIPLPNAGYHLYNFHKLTI 193

Query: 416 PLFKLKYTVVNSTKIVTR 469
           PL  ++ + V  T   TR
Sbjct: 194 PLHIIEESRVGGTYRETR 211


>03_01_0579 -
           4274927-4274998,4275320-4275427,4275529-4275904,
           4275986-4276143,4276229-4276349,4276426-4276644,
           4276736-4276835,4276923-4277196,4277287-4277430
          Length = 523

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 560 AQFPPDLLDLLNEYMTKSSIMKI 628
           A+ PPD + LLN+Y+ + +I+ I
Sbjct: 54  AEIPPDAIPLLNQYLQEGNIVYI 76


>01_01_0527 +
           3867621-3867764,3867855-3868128,3868216-3868315,
           3868407-3868625,3868702-3868822,3868908-3869065,
           3869147-3869522,3869624-3869731,3870053-3870124
          Length = 523

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 560 AQFPPDLLDLLNEYMTKSSIMKI 628
           A+ PPD + LLN+Y+ + +I+ I
Sbjct: 54  AEIPPDAIPLLNQYLQEGNIVYI 76


>06_03_1277 +
           28918140-28918279,28919552-28919761,28920179-28920374,
           28920459-28920853,28921024-28921119,28921330-28921402,
           28921650-28921935,28923824-28923946,28924123-28924404,
           28924513-28924928
          Length = 738

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 296 GEDMAKHFVDNNILPPHPS 352
           GED+   FVD+ I P HPS
Sbjct: 229 GEDVVIGFVDSGIYPQHPS 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,083,348
Number of Sequences: 37544
Number of extensions: 358001
Number of successful extensions: 878
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)