Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d07
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_30582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)                        28   5.7  
SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)                   28   7.5  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       28   7.5  
SB_20394| Best HMM Match : SbmA_BacA (HMM E-Value=6.2)                 28   7.5  
SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 28   7.5  
SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)                      27   9.9  

>SB_23347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 218 VDWNGVRMCAAPRLDNNMHPFRLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSM 385
           +DW G+RM  A   +           G     HFV + I    P++A++    N+M
Sbjct: 241 MDWEGLRMLDAEAKEGEEAKKERTFEGSPKESHFVRSTISRQMPNSAQSSAFRNAM 296


>SB_30582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 333 ILLSTKCLAMSSPSRYNRNGCMLLSNRGAAHIRTP 229
           +L S   L +  PS  N NGC  +SNR A++ + P
Sbjct: 14  VLASIYELQLFGPSLKNGNGCPRMSNRRASNNKRP 48


>SB_544| Best HMM Match : PDZ (HMM E-Value=0.15)
          Length = 742

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 333 ILLSTKCLAMSSPSRYNRNGCMLLSNRGAAHIRTP 229
           +L S   L +  PS  N NGC  +SNR A++ + P
Sbjct: 39  VLASIYELQLFGPSLKNGNGCPRMSNRRASNNKRP 73


>SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)
          Length = 1122

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 278 TDACCYLIAAPHTFAHHSNPRTRRRTKNRHCPLTR 174
           TDA  + +  P+ FA  SNP   R   +  CP  R
Sbjct: 700 TDANVFPLNTPYEFARISNPTFSRSDSSSSCPSPR 734


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 473  PNDIFNEIDKELNGNCP---FIKFIQRDYIFDAQFPPDLLDLLNEYMTK 610
            PND     D E  G  P   + ++I R +IF      D  DL+  Y+T+
Sbjct: 1035 PNDFLTFQDVETEGRHPIRLYSRYIDRIHIFFRFSAEDARDLIQRYLTE 1083


>SB_20394| Best HMM Match : SbmA_BacA (HMM E-Value=6.2)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 155 NINNYGCVLAGSAGFLFDDAYVDWNG-VRMCAAP 253
           NINNY   L+G  G L      DW   +R+C+ P
Sbjct: 91  NINNYYWELSGLLGILLAYYIRDWRTMIRVCSTP 124


>SB_14846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 155 NINNYGCVLAGSAGFLFDDAYVDWNG-VRMCAAP 253
           NINNY   L+G  G L      DW   +R+C+ P
Sbjct: 32  NINNYYWELSGLLGILLAYYIRDWRTMIRVCSTP 65


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 272  HPFRLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNS 451
            HP  L    ++ +    D N      S  +T ++   +F+LK  ++ LP+F+LK     +
Sbjct: 3597 HPNSLTENADEYSLLIDDINAAMTADSPTETTRMQVGIFLLKQVHEKLPMFELKRICEQN 3656

Query: 452  TKIVTRK 472
            +++   K
Sbjct: 3657 SRLKALK 3663


>SB_57708| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 528

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 425 KLKYTVVNST-KIVTRKPNDIFNEIDKELNGNCPFIKF 535
           K+ +T   +T KI+  K  D   ++  EL GN PFI F
Sbjct: 224 KMSFTGSTATGKILMAKCVDTVKKMSLELGGNAPFIVF 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,070,624
Number of Sequences: 59808
Number of extensions: 430390
Number of successful extensions: 1035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)