Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d07
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical pr...    31   0.93 
Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82068-1|CAB04897.1|  149|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical...    28   5.0  
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    28   6.6  
U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical p...    28   6.6  
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ...    28   6.6  
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote...    28   6.6  
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    28   6.6  
AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical
           protein C33H5.6 protein.
          Length = 248

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 2   TTVDILEFDTRMYIKP-GTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCV 178
           TT+ +L    + Y++    H    N   +NP+    FL +      +        NYGC+
Sbjct: 91  TTIRLLHLQKKSYVRYFDGHRMPVNFIRTNPKDREKFLSSSVDGEIRMFDTRTFENYGCL 150

Query: 179 LAG 187
           LAG
Sbjct: 151 LAG 153


>Z81082-5|CAB03093.2|  429|Caenorhabditis elegans Hypothetical
           protein F42G4.2 protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 479 DIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDLLNEYMTKSSI 619
           D+ + ++K L    P    I  +Y FDA  P D+L+  +EY++  ++
Sbjct: 270 DLIDMVEKYLKCTMPRGTLIPENYNFDALAPIDILESNSEYVSPETV 316


>U40427-1|AAA81467.2|  798|Caenorhabditis elegans Hypothetical
           protein F43C9.3 protein.
          Length = 798

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 275 PFRLYLLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNST 454
           PF + L  +D+    VDNN  P     +     NN   +++N  + + + K      NS 
Sbjct: 607 PFAVNLFQQDIESMIVDNNYAP-----SAINWPNNGKTVIQNVIESIRMLKKDIADNNSQ 661

Query: 455 KIVTRKPND 481
           +I+  K ND
Sbjct: 662 QIICLKSND 670


>Z81055-7|CAB02897.2|  445|Caenorhabditis elegans Hypothetical
           protein F01G10.9 protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 335 LPP-HPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTRKPNDIFNEIDKELN 511
           LPP  P     +++ + +  LK   +  P    + T  +  KI     +    ++ K   
Sbjct: 355 LPPSQPIQPVQQQVGHDILKLKPILQSNPQEMQEATAESCAKITKLAKSFSIKDVSKWAR 414

Query: 512 GNCPFIK 532
           GNCPF++
Sbjct: 415 GNCPFLQ 421


>Z82068-1|CAB04897.1|  149|Caenorhabditis elegans Hypothetical
           protein W04A4.3 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 102 WLSCTLNLARCLRIKYSXXXXXXAAC*RAVPVFCSTTRTWIGMVCECVRRRD 257
           WL C LN  +C   KYS           AV + C   + W G   +C++ R+
Sbjct: 97  WLECQLNKLQCCTKKYSRNVTDFEIL--AV-LECIQGKQWFGKALDCLQPRN 145


>AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical
           protein Y52B11A.10 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 392 LKNFYKGLPLFKLKYTVVNSTK--IVTRKPNDIFNEIDKELNGNCPFIKFIQRDYIFDAQ 565
           L N +    L    Y  +  T   +VT+K ++I +E +K+     P  KF+  + I   +
Sbjct: 468 LTNLFAIRTLIAYAYKSLKKTSWPLVTQKIDEIHSEFEKKPISALPRAKFLLEEVILLKK 527

Query: 566 FPPDLLD 586
            PP  +D
Sbjct: 528 SPPKAID 534


>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
            ZK1151.1b protein.
          Length = 4944

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 476  NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 589
            ND+F  ID+   GN P   FI  D I  ++FP   L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682


>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
            ZK1151.1b protein.
          Length = 4944

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 476  NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 589
            ND+F  ID+   GN P   FI  D I  ++FP   L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682


>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 326 NNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTRKPNDIFN-EIDK 502
           N+I+P  P N   R+    ++  ++ ++ LPL  ++ T       + R+ +D+ N ++D 
Sbjct: 234 NSIIPSKPRNIDVRRALLQLYQDRDAFQSLPL-DMEGTFGEVRYAIWRQVDDVLNGDVDD 292

Query: 503 ELNGNC 520
           E +  C
Sbjct: 293 EEDTFC 298


>U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical
           protein B0228.8 protein.
          Length = 454

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 38  YIKPGTHVYATNLFTSNPRKMMAFLYAEFGKV--FKNKIFVNINNYG 172
           YI P T V+  ++   N  + + + Y  FGKV  +   +F +I+N G
Sbjct: 234 YITPATKVFICDVGKMNGNQFVEYWYKRFGKVQTYSEHVF-DISNNG 279


>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
            protein ZK1151.1b protein.
          Length = 4944

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 476  NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 589
            ND+F  ID+   GN P   FI  D I  ++FP   L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682


>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
            protein.
          Length = 4944

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 476  NDIFNEIDKELNGNCPFIKFIQRDYIFDAQFPPDLLDL 589
            ND+F  ID+   GN P   FI  D I  ++FP   L++
Sbjct: 4647 NDLFRRIDRLHTGNVPRQVFI--DGIIGSKFPTSRLEM 4682


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 326 NNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTRKPNDIFN-EIDK 502
           N+I+P  P N   R+    ++  ++ ++ LPL  ++ T       + R+ +D+ N ++D 
Sbjct: 255 NSIIPSKPRNIDVRRALLQLYQDRDAFQSLPL-DMEGTFGEVRYAIWRQVDDVLNGDVDD 313

Query: 503 ELNGNC 520
           E +  C
Sbjct: 314 EEDTFC 319


>AF000198-9|AAB53057.4|  684|Caenorhabditis elegans Hypothetical
           protein T28F2.7 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 7/32 (21%), Positives = 21/32 (65%)
 Frame = +3

Query: 285 CIYWARTWLSTLSIIIYYRRTLLTQRLAKSTI 380
           C++W   W+S++ +++    +L++  ++K T+
Sbjct: 104 CVFWVFIWISSMIMLLTQVTSLISMYISKPTV 135


>Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical
           protein T20G5.4 protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 524 FIKFIQRDYIFDAQFPPDLLDLLNEYMT 607
           F+  + R Y+  ++  PD++DL+  +MT
Sbjct: 249 FVGILARQYVKGSEIDPDMIDLVFPFMT 276


>U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical
           protein D1005.6 protein.
          Length = 131

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 338 PPHPSNAKTR-KINNSMFML-KNFYKGLPLFKLKYTVVNSTKIVTRKPNDIFNE 493
           PP P  A+ + +I  +   L K F K  P F   YTV N  K+  +K + IF E
Sbjct: 18  PPPPEAAEIQSQIRKAKLKLNKKFLKLKPYF-FSYTVDNMPKVSKKKFDKIFTE 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,820,823
Number of Sequences: 27780
Number of extensions: 326011
Number of successful extensions: 756
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)