Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d07
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45480.1 68415.m05656 expressed protein                             33   0.16 
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    32   0.29 
At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to aut...    31   0.87 
At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to aut...    30   1.2  
At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3) ident...    28   4.7  
At3g59700.1 68416.m06661 lectin protein kinase, putative similar...    28   4.7  
At2g19170.1 68415.m02237 subtilase family protein contains simil...    28   4.7  
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH...    28   6.1  
At4g30020.1 68417.m04272 subtilase family protein contains simil...    27   8.1  
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS...    27   8.1  

>At2g45480.1 68415.m05656 expressed protein
          Length = 429

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -1

Query: 312 LAMSSPSRYNRNGCMLLSNRGAAHIRT 232
           LA+SS S YN +   LLSN+G  HI T
Sbjct: 59  LALSSSSNYNYHSSSLLSNKGVTHIDT 85


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +2

Query: 299 EDMAKHFVD-NNILPPH-PSNAKTRKINNSMFMLKNFYKGLPLFKLKYT-VVNSTKIVTR 469
           E + +HFV+  N+L P  P N K   + +++ +LK     +   K +YT + + ++ +T+
Sbjct: 19  EKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ 78

Query: 470 KPNDIFNE 493
           + ND+  E
Sbjct: 79  EKNDLREE 86


>At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to
           autophagy 12b [Arabidopsis thaliana],
           gi|19912171|dbj|BAB88397
          Length = 94

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 11  DILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLA 184
           ++++F  R        VY  + F+ NP + +  LY  FG  F  K+ V   NY C +A
Sbjct: 40  NVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFG--FDGKLVV---NYACSMA 92


>At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to
           autophagy 12a [Arabidopsis thaliana] GI:19912169
          Length = 96

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 14  ILEFDTRMYIKPGTHVYATNLFTSNPRKMMAFLYAEFGKVFKNKIFVNINNYGCVLA 184
           +++F  R        VY  + F+ NP + +  LY  FG  F  K+ V   NY C +A
Sbjct: 43  VIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFG--FDGKLVV---NYACSMA 94


>At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3)
           identical to receptor lectin kinase 3 [Arabidopsis
           thaliana] gi|4100060|gb|AAD00733
          Length = 659

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 119 EFGKVFKNKIFVNINNYGCVLAGSAGFLFDD 211
           EFG +  N + +NIN    V + SAG+ +DD
Sbjct: 133 EFGDIDDNHVGININGLTSVASASAGY-YDD 162


>At3g59700.1 68416.m06661 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733
          Length = 661

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 119 EFGKVFKNKIFVNINNYGCVLAGSAGFLFDD 211
           EFG +  N + +NIN    V + SAG+ +DD
Sbjct: 139 EFGDIDDNHVGININGLRSVASASAGY-YDD 168


>At2g19170.1 68415.m02237 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 815

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 296 GEDMAKHFVDNNILPPHPSNAKTRKI 373
           GED+   FVD+ I P HPS A   ++
Sbjct: 151 GEDIVIGFVDSGIYPHHPSFASHHRL 176


>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 822

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 339 GSILLSTKCLAMSSPSRYNRNGCMLLSNRGAAHIRTPFQSTYAS 208
           GS+ +ST   A+S P   + + CML  N   + I  PF  T+++
Sbjct: 574 GSVFVSTYT-ALSMPDTMHGDICMLALNNTTSLILLPFHQTWSA 616


>At4g30020.1 68417.m04272 subtilase family protein contains
           similarity to meiotic serine proteinase TMP GI:6468325
           from [Lycopersicon esculentum]
          Length = 816

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 296 GEDMAKHFVDNNILPPHPSNA 358
           GED+   F+D+ I P HPS A
Sbjct: 151 GEDIVIGFIDSGIFPHHPSFA 171


>At3g07040.1 68416.m00836 disease resistance protein RPM1
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           Identical to RPM1 (gi:1361985)
          Length = 926

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +2

Query: 290 LLGEDMAKHFVDNNILPPHPSNAKTRKINNSMFMLKNFYKGLPLFKLKYTVVNSTKIVTR 469
           LL ED A     N   P      +T+ +      L    +GLPL       + STK    
Sbjct: 335 LLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFES 394

Query: 470 KPNDIFNEIDKELNGN 517
           +   +++ ++ ELN N
Sbjct: 395 EWKKVYSTLNWELNNN 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,565
Number of Sequences: 28952
Number of extensions: 289420
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)