Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d06
(463 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62; Fungi/... 130 2e-29
UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55; Euka... 122 5e-27
UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29; Euka... 119 3e-26
UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1; B... 119 4e-26
UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2; Cryptos... 116 2e-25
UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative... 113 1e-24
UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n... 112 3e-24
UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5; ... 111 9e-24
UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n... 109 3e-23
UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3; ... 103 2e-21
UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, wh... 97 1e-19
UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1; Encepha... 86 4e-16
UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1; A... 82 5e-15
UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3; ... 79 6e-14
UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=... 77 2e-13
UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3; Archae... 63 2e-09
UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1; ... 61 1e-08
UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8; Archae... 60 2e-08
UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilu... 59 4e-08
UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3; Methan... 57 2e-07
UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4; Thermo... 57 2e-07
UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5; Methanococ... 54 2e-06
UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiell... 49 6e-05
UniRef50_Q74NH0 Cluster: NEQ297; n=1; Nanoarchaeum equitans|Rep:... 48 1e-04
UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3; Pyroba... 44 0.002
UniRef50_Q98SA5 Cluster: 60S ribosomal protein L34; n=1; Guillar... 43 0.004
UniRef50_Q975K6 Cluster: 50S ribosomal protein L34e; n=2; Sulfol... 41 0.011
UniRef50_A2R4Y9 Cluster: Remark: the regulator An1000 is involve... 33 3.0
UniRef50_UPI00003AD95B Cluster: PREDICTED: hypothetical protein;... 32 7.0
UniRef50_Q7P5Y3 Cluster: Chromosomal replication initiator prote... 32 7.0
UniRef50_Q9UAI1 Cluster: MRNA expressed in the host plant, parti... 32 7.0
UniRef50_A6WGY4 Cluster: Putative uncharacterized protein; n=1; ... 31 9.2
UniRef50_Q567X9 Cluster: Uncharacterized protein KIAA1754 homolo... 31 9.2
>UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62;
Fungi/Metazoa group|Rep: 60S ribosomal protein L34 -
Homo sapiens (Human)
Length = 117
Score = 130 bits (313), Expect = 2e-29
Identities = 66/107 (61%), Positives = 76/107 (71%), Gaps = 3/107 (2%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 227
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 228 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 365
P RL KK V R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55;
Eukaryota|Rep: 60S ribosomal protein L34-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 121
Score = 122 bits (293), Expect = 5e-27
Identities = 58/102 (56%), Positives = 72/102 (70%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
M QR+TFRRR YNT+SN+ ++V+TPGG L Q+VKK P+CG C S L+GI RP
Sbjct: 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 234 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
+ + + KTV R YGG C CVK+RI+RAFLIEEQKIVK
Sbjct: 61 QYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVK 102
>UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29;
Eukaryota|Rep: 60S ribosomal protein L34-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 120
Score = 119 bits (287), Expect = 3e-26
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 2/104 (1%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 234 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
E RSRL ++TV R YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVK 104
>UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1;
Babesia bovis|Rep: Ribosomal protein L34, putative -
Babesia bovis
Length = 157
Score = 119 bits (286), Expect = 4e-26
Identities = 58/102 (56%), Positives = 69/102 (67%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
MVQR+ RR YNT+SN++R V+TPGGRLV Q K + P+CG CK KL GI RP
Sbjct: 1 MVQRVVLRRHCRYNTRSNKQRKVKTPGGRLVVQRRVKVAQGPKCGDCKCKLAGIPALRPH 60
Query: 234 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
L R++ V R YGGV CHKCVK RI+RAFL EEQK +K
Sbjct: 61 LYRNLKKRERRVSRAYGGVRCHKCVKDRIIRAFLKEEQKALK 102
>UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L34 -
Cryptosporidium parvum Iowa II
Length = 138
Score = 116 bits (280), Expect = 2e-25
Identities = 54/103 (52%), Positives = 69/103 (66%)
Frame = +3
Query: 51 KMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARP 230
KM R+T+RR+ YNT SN+ R+V+TPGGR + Q + K P+CG CK L GI P
Sbjct: 3 KMSPRVTYRRKCRYNTPSNRVRVVKTPGGRNLIQNIGKVYSRPKCGDCKKPLAGIPACAP 62
Query: 231 AERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
E L R++TV R YGG C CV+QRI+RAFL+EEQK+VK
Sbjct: 63 YEMKHLKKRERTVARAYGGTKCPTCVRQRILRAFLLEEQKVVK 105
>UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative;
n=10; Eukaryota|Rep: Ribosomal protein L34 protein,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 192
Score = 113 bits (273), Expect = 1e-24
Identities = 57/101 (56%), Positives = 67/101 (66%)
Frame = +3
Query: 57 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 236
+ R F R YNT+SN+ RI++TPGG L Y ++KK P+CG C KL GI RP E
Sbjct: 81 IDRFLFYR---YNTRSNKVRIIKTPGGELRYLHIKKKGTAPKCGDCGIKLPGIPALRPRE 137
Query: 237 RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
S++ KKTV R YGG C CVK RIVRAFLIEEQKIVK
Sbjct: 138 YSQISRPKKTVSRAYGGSRCAGCVKDRIVRAFLIEEQKIVK 178
>UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n=4;
Eukaryota|Rep: 60S ribosomal protein L34a, putative -
Theileria parva
Length = 138
Score = 112 bits (270), Expect = 3e-24
Identities = 56/102 (54%), Positives = 64/102 (62%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
MVQR+ +RRR Y T SN + VRTPG RLV +KK K PRCG CK L G+ RP
Sbjct: 1 MVQRVHYRRRNKYKTPSNVVKRVRTPGARLVLHNLKKVGKRPRCGDCKRTLAGVSAVRPF 60
Query: 234 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
L R +TV R YGG CH CVK RI+RAFL EEQK V+
Sbjct: 61 LYKNLKRRNRTVSRPYGGSRCHNCVKDRIIRAFLKEEQKCVR 102
>UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5;
Plasmodium|Rep: Ribosomal protein L34e, putative -
Plasmodium yoelii yoelii
Length = 164
Score = 111 bits (266), Expect = 9e-24
Identities = 48/102 (47%), Positives = 68/102 (66%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
M QR+ +R+ YNTKSN+ R +RTPGG+L +KK P+C CK+ ++G++ RPA
Sbjct: 1 MAQRVHYRKHNHYNTKSNKVRPIRTPGGKLTIHVIKKKAGKPKCADCKNPIQGVKALRPA 60
Query: 234 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
+ R + + V R YGG +C KC K+RI+RAFL EEQK V+
Sbjct: 61 DNQRARKKDRKVSRAYGGSICAKCXKERIMRAFLFEEQKCVR 102
>UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L34e - Antonospora locustae (Nosema locustae)
Length = 113
Score = 109 bits (262), Expect = 3e-23
Identities = 52/101 (51%), Positives = 70/101 (69%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
MVQ LT R R +YN SNQ++I RTPG R VY KKP ++P+C +C+SKLRGI RPA
Sbjct: 1 MVQHLTHRGRRTYNNASNQKKIRRTPGNRRVYIPKKKPGRVPKCVKCRSKLRGIDICRPA 60
Query: 234 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 356
+RL ++TV R YGG LC C++ RI+ AFL E++++
Sbjct: 61 AFARLRKSQRTVARTYGGNLCGSCLENRILDAFLSAEEQLL 101
>UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L34 - Entamoeba histolytica HM-1:IMSS
Length = 137
Score = 103 bits (247), Expect = 2e-21
Identities = 50/103 (48%), Positives = 67/103 (65%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
M R+T+ R+ SYNTKSN RIV+T GG + Q+ +K RCG C L GI+ RP
Sbjct: 1 MAVRVTYVRKHSYNTKSNGIRIVKTAGGNMTVQHRQKISNGVRCGDCGCVLAGIRHIRPH 60
Query: 234 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 362
+ L K+TV R YGGV CHKCV+++I+RAFLI E ++K+
Sbjct: 61 QYGWLGKSKRTVTRAYGGVRCHKCVQKKILRAFLINEHNLIKL 103
>UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 108
Score = 97.5 bits (232), Expect = 1e-19
Identities = 49/101 (48%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Frame = +3
Query: 63 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSK--LRGIQPARPAE 236
R+T+RRR SYNT+SN+ R V+TPGG +V QY K C L G++ RP +
Sbjct: 4 RITYRRRTSYNTRSNKIRKVKTPGGNVVVQYPNKKTSASTCADSNLNVVLNGLKRIRPTK 63
Query: 237 RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
+L R++TV R YGGVL +K RI+RAFL+EE KIVK
Sbjct: 64 LKQLARRQRTVSRPYGGVLSAGALKNRIIRAFLVEEVKIVK 104
>UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L34
- Encephalitozoon cuniculi
Length = 110
Score = 85.8 bits (203), Expect = 4e-16
Identities = 42/100 (42%), Positives = 61/100 (61%)
Frame = +3
Query: 57 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 236
++ + + +Y T+SN+RR VRTP G+LV + VKK K RC +C + L I RPAE
Sbjct: 1 MKNVLIHKGATYKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAE 60
Query: 237 RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 356
SR + V R YG C +CV+++I+ AFL E++IV
Sbjct: 61 FSRQKVSARRVNRPYGATTCGRCVREKIISAFLGNEERIV 100
>UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1;
Aedes aegypti|Rep: Ribosomal protein L34, putative -
Aedes aegypti (Yellowfever mosquito)
Length = 123
Score = 82.2 bits (194), Expect = 5e-15
Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Frame = +3
Query: 81 RLSYNTKSNQRRIVRTPGG-RLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYR 257
++SYNT N+RR+VRT G RLVY ++KK + + +C QCK + Q + +C
Sbjct: 9 KMSYNT--NKRRVVRTLGSDRLVYLFIKKQRIVSKCCQCKGEAVRNQAS---VHVCMCRC 63
Query: 258 KKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKVL 365
KTV R +GGV+CH+ +RI+RAFLI+EQK+VKVL
Sbjct: 64 LKTVIRTFGGVICHR---ERIIRAFLIDEQKVVKVL 96
>UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein L34e,
putative - Trichomonas vaginalis G3
Length = 116
Score = 78.6 bits (185), Expect = 6e-14
Identities = 38/94 (40%), Positives = 54/94 (57%)
Frame = +3
Query: 63 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 242
R T RR L ++T N+ VRTPG +LV Y+ K + P C + ++ GI+ + E
Sbjct: 5 RYTLRRSLGFHTIRNRVAPVRTPGNKLVAHYIAKRQNGPHCAETGKRINGIKCVKTCELR 64
Query: 243 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEE 344
R+ ++TV R YGGV C VK RI+ AF+ EE
Sbjct: 65 RMKKNQRTVSRPYGGVYCGAVVKDRIINAFMEEE 98
>UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=10;
Trypanosomatidae|Rep: 60S ribosomal protein L34,
putative - Leishmania major
Length = 168
Score = 76.6 bits (180), Expect = 2e-13
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 2/101 (1%)
Frame = +3
Query: 63 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQY-VKKPKKIPRCGQCKSKLRGIQPARPAER 239
R+ +RRR+ Y T+ N+ ++VRTPG +LV Q K+ + I K G A
Sbjct: 5 RVQYRRRMHYATRGNRMKMVRTPGNKLVMQKRAKRSQGIHTPWVLGHKRLGGTKALRHID 64
Query: 240 SRLCYR-KKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
+RL R +K+V R YGGVL H V+ R+VRAFL+EEQ+IVK
Sbjct: 65 ARLASRHEKSVSRAYGGVLSHDQVRDRVVRAFLVEEQRIVK 105
>UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3;
Archaea|Rep: 50S ribosomal protein L34e - Methanopyrus
kandleri
Length = 113
Score = 63.3 bits (147), Expect = 2e-09
Identities = 30/77 (38%), Positives = 41/77 (53%)
Frame = +3
Query: 90 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 269
Y ++S +R RTPGGR V + KK P+CG C +L G+ R E +K
Sbjct: 6 YRSRSCRRVYKRTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVELKNAPKTQKRP 65
Query: 270 KRVYGGVLCHKCVKQRI 320
R YGGVLC +C ++ I
Sbjct: 66 NRPYGGVLCPECARKLI 82
>UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 97
Score = 60.9 bits (141), Expect = 1e-08
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = +3
Query: 117 IVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKRVYGGVLC 296
+++TPG + Y ++KK IPRCG L+GI +RL + KKTV+R YGG L
Sbjct: 26 VIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALVLVSLTRLSHNKKTVQRAYGGCLS 85
Query: 297 HKCVKQRIVRAF 332
V+ IVRAF
Sbjct: 86 ANAVRS-IVRAF 96
>UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8;
Archaea|Rep: 50S ribosomal protein L34e - Pyrococcus
abyssi
Length = 91
Score = 60.1 bits (139), Expect = 2e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Frame = +3
Query: 90 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 269
Y ++S +R+ VRTPGGR+V + ++ KI C C L GI RP E +L KK
Sbjct: 5 YRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRP 64
Query: 270 KRVYGGVLCHKCVKQ 314
+R Y LC KC+++
Sbjct: 65 ERPYPH-LCPKCMRR 78
>UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L34e - Thermofilum
pendens (strain Hrk 5)
Length = 91
Score = 59.3 bits (137), Expect = 4e-08
Identities = 29/80 (36%), Positives = 45/80 (56%)
Frame = +3
Query: 81 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRK 260
R + ++S +R++VRTPGGRL + K P+C C ++G+ P + R R
Sbjct: 3 RPALRSRSKKRKLVRTPGGRLALHVIDKKHDYPKCAICGRPIQGV-PKLTSRLERRGVRM 61
Query: 261 KTVKRVYGGVLCHKCVKQRI 320
T R YGG LCH+C+++ I
Sbjct: 62 PT--RPYGGYLCHECLRKGI 79
>UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3;
Methanobacteriaceae|Rep: 50S ribosomal protein L34e -
Methanobacterium thermoautotrophicum
Length = 88
Score = 57.2 bits (132), Expect = 2e-07
Identities = 28/77 (36%), Positives = 37/77 (48%)
Frame = +3
Query: 84 LSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKK 263
L Y ++S +R +TPGGR V Y +K C C L G+ RP E +L KK
Sbjct: 4 LRYRSRSYKRIFKKTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIRKLSKSKK 63
Query: 264 TVKRVYGGVLCHKCVKQ 314
R YGG C C ++
Sbjct: 64 RPNRPYGGYYCSSCARK 80
>UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4;
Thermoprotei|Rep: 50S ribosomal protein L34e - Aeropyrum
pernix
Length = 95
Score = 56.8 bits (131), Expect = 2e-07
Identities = 30/83 (36%), Positives = 40/83 (48%)
Frame = +3
Query: 81 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRK 260
R ++S +R RTPGG V Y ++ RC +C L G+ RP RL
Sbjct: 8 RPGLRSRSLRRVYRRTPGGSTVVHYERRKPGPARCARCGRPLGGVPRGRPPRVRRLSKTA 67
Query: 261 KTVKRVYGGVLCHKCVKQRIVRA 329
K +R YGGVLC C+ + I A
Sbjct: 68 KRPERPYGGVLCSTCLAEMIFEA 90
>UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5;
Methanococcus|Rep: Ribosomal protein L34e -
Methanococcus maripaludis
Length = 89
Score = 53.6 bits (123), Expect = 2e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 90 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 269
Y + S+++ + PG + Y +K + CG C + L G+ R E ++L +K
Sbjct: 6 YKSGSSKKVYRKAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEITKLAKTEKRP 65
Query: 270 KRVYGGVLCHKCVKQRIV 323
+R +GG LC KCVK+ +V
Sbjct: 66 ERPFGGNLCPKCVKKMMV 83
>UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiella
natans|Rep: Ribosomal protein L34 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 90
Score = 48.8 bits (111), Expect = 6e-05
Identities = 30/100 (30%), Positives = 53/100 (53%)
Frame = +3
Query: 63 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 242
R+T ++R +Y T SN+ I + GG+ V +Y+ KK+ +CK + I +
Sbjct: 2 RITLKKRKTYKTNSNKFIIKKILGGKYVAKYI---KKLRTSNKCKYTNKDIPTSN----- 53
Query: 243 RLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVKV 362
+K + R+YG + HK VKQ+++ FL E K +++
Sbjct: 54 ----KKPRLSRIYGKEIHHKIVKQKLLIKFLKTENKSLRI 89
>UniRef50_Q74NH0 Cluster: NEQ297; n=1; Nanoarchaeum equitans|Rep:
NEQ297 - Nanoarchaeum equitans
Length = 83
Score = 47.6 bits (108), Expect = 1e-04
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 123 RTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE--RSRLCYRKKTVKRVYGGVLC 296
RTPGGR+ Y ++ +C C L+G+ PA +S RKK V R +GG LC
Sbjct: 9 RTPGGRVTVLYKRRKPSPAKCAICGRPLQGVV-REPAYWLKSEPKQRKK-VSRKFGGYLC 66
Query: 297 HKCVKQRIVR 326
H+C ++ I R
Sbjct: 67 HECARRVIAR 76
>UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3;
Pyrobaculum|Rep: 50S ribosomal protein L34e -
Pyrobaculum aerophilum
Length = 84
Score = 43.6 bits (98), Expect = 0.002
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = +3
Query: 81 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRK 260
R +Y ++S +R V+TPGGR V Y K+ K +P+C + G+ + R +
Sbjct: 3 RPAYRSRSVRRIKVKTPGGRTVIHYEKRAKGVPKCPITGLPIGGMN----KKVYRFGIKI 58
Query: 261 KTVKRVYGGVLCHKCVKQRI 320
+ R YGGV HK + + +
Sbjct: 59 RAPSRPYGGVYSHKVLARAL 78
>UniRef50_Q98SA5 Cluster: 60S ribosomal protein L34; n=1; Guillardia
theta|Rep: 60S ribosomal protein L34 - Guillardia theta
(Cryptomonas phi)
Length = 103
Score = 42.7 bits (96), Expect = 0.004
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +3
Query: 81 RLSYNTKSN-QRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYR 257
RLS + S+ +R+ +TPGGRLV +KK K RC L GI +
Sbjct: 5 RLSCHRNSHSKRKNTKTPGGRLVSILLKKKIKKKRCPVNGKILNGIDSDIVRKTG----- 59
Query: 258 KKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 359
K + R G L +K +I+++FL EE+K+ K
Sbjct: 60 KTHISRHSSGDLSASALKDKIIKSFLKEEKKLAK 93
>UniRef50_Q975K6 Cluster: 50S ribosomal protein L34e; n=2;
Sulfolobus|Rep: 50S ribosomal protein L34e - Sulfolobus
tokodaii
Length = 87
Score = 41.1 bits (92), Expect = 0.011
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = +3
Query: 90 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 269
Y + S ++ + P G+ Y ++ C CK L+G++ + S+ +K
Sbjct: 6 YRSTSYRKIHTKLPSGKSTIHYERRKNNRAVCAICKKPLQGVKTNLLYKYSKT---EKRP 62
Query: 270 KRVYGGVLCHKCVKQRI 320
+R+YGG +C+KC++ I
Sbjct: 63 ERMYGGYICYKCLENLI 79
>UniRef50_A2R4Y9 Cluster: Remark: the regulator An1000 is involved
in the gene expression regulation of FLO11; n=1;
Aspergillus niger|Rep: Remark: the regulator An1000 is
involved in the gene expression regulation of FLO11 -
Aspergillus niger
Length = 894
Score = 33.1 bits (72), Expect = 3.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 254 VAKTRTFSRSSWLDTTEFALALTTPWDLLGLFDILINQAA 135
V+KTR F + W++ L T L+GL+DI+I +
Sbjct: 321 VSKTRVFGQGHWMNIFSLTEGLPTLQPLMGLYDIIIRNTS 360
>UniRef50_UPI00003AD95B Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 1221
Score = 31.9 bits (69), Expect = 7.0
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 391 DLVLACCALRTFTIFCSSIRKALTMRCLTHLWQR 290
DL LA C T C+ AL CLT LW R
Sbjct: 421 DLTLAVCLSVFITFLCAFCLGALARPCLTRLWMR 454
>UniRef50_Q7P5Y3 Cluster: Chromosomal replication initiator protein
dnaA; n=3; Fusobacterium nucleatum|Rep: Chromosomal
replication initiator protein dnaA - Fusobacterium
nucleatum subsp. vincentii ATCC 49256
Length = 637
Score = 31.9 bits (69), Expect = 7.0
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSK-LRGIQPARP 230
+V ++ +R + YNTK+ +V+ P +Y+Y+ K + G+ + L I P +
Sbjct: 235 IVNKIKSKRYIKYNTKNLLEIMVKDPIASRIYKYISKIRYKNNKGEINVRTLAAIIPLKI 294
Query: 231 AERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAF 332
+R K VK Y + K V RI++AF
Sbjct: 295 EQRVERIV-KNGVKEYYLNRM--KPVLTRILKAF 325
>UniRef50_Q9UAI1 Cluster: MRNA expressed in the host plant, partial
cds; n=1; Plasmodiophora brassicae|Rep: MRNA expressed
in the host plant, partial cds - Plasmodiophora
brassicae
Length = 99
Score = 31.9 bits (69), Expect = 7.0
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = -3
Query: 320 NALLDAFMAEDTTIDTFHCFLTVAKTRTFSRSSWLDTTEFALALTTPWDLLGLFDILINQ 141
+AL A A DT D+ + V++TR+ RSS A+ W + ++N
Sbjct: 9 SALSSASTASDTGSDSSAFAIIVSRTRSCRRSSAYTDDCMAIRSRRSWANIRSTTRMVNV 68
Query: 140 AATRCPYYSSLI*FCVVRQSSP 75
+++ C + SS FC SP
Sbjct: 69 SSSSCCFKSSSRLFCTNSFHSP 90
>UniRef50_A6WGY4 Cluster: Putative uncharacterized protein; n=1;
Kineococcus radiotolerans SRS30216|Rep: Putative
uncharacterized protein - Kineococcus radiotolerans
SRS30216
Length = 266
Score = 31.5 bits (68), Expect = 9.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Frame = +3
Query: 177 PRCGQCKSKLRGIQPA-------RPAERSRLCYRKKTVKRVYGGVLCHKCVK 311
PRC +C +K R + A R C+R KT YG +C +C K
Sbjct: 13 PRCARCSTKPRKLDSTFCTACSLETANREHRCHRCKTNLPRYGWDMCDRCTK 64
>UniRef50_Q567X9 Cluster: Uncharacterized protein KIAA1754 homolog
precursor; n=4; Clupeocephala|Rep: Uncharacterized
protein KIAA1754 homolog precursor - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 539
Score = 31.5 bits (68), Expect = 9.2
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +2
Query: 14 VILSLSPAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQK 163
V+L+L+PAV+ EN AY+ + H NS DT W L LSV +K
Sbjct: 333 VVLNLTPAVQ-FEN-TDAYL-----ISHFPSDTSNSSDTHWQLSLSVYEK 375
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,436,661
Number of Sequences: 1657284
Number of extensions: 7779188
Number of successful extensions: 18708
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 18323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18694
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24771286585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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