Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d06
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical... 121 2e-28
Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical pr... 29 1.6
U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical pr... 29 1.6
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 2.1
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 29 2.1
Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical pr... 28 3.7
U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical p... 27 4.9
AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 27 6.5
>CU457741-15|CAM36357.1| 110|Caenorhabditis elegans Hypothetical
protein C42C1.14 protein.
Length = 110
Score = 121 bits (292), Expect = 2e-28
Identities = 59/101 (58%), Positives = 72/101 (71%)
Frame = +3
Query: 54 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 233
M R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK +IP+C KL GI PARP
Sbjct: 1 MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60
Query: 234 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 356
L ++TV R YGG L VK+RI RAFL+EEQKIV
Sbjct: 61 ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101
>Z81015-2|CAB02660.1| 411|Caenorhabditis elegans Hypothetical
protein C11E4.3 protein.
Length = 411
Score = 29.1 bits (62), Expect = 1.6
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +3
Query: 6 CYLLFFPCHQLSKSLK-----MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 167
C LF+ C K L MV+R+ RR + Y T+ N + GR+V+ +K P
Sbjct: 189 CEDLFYECQLAGKILDCCNDLMVRRVVMRRGICYQTRKNVNQSEADDIGRIVFS-LKAP 246
>U97016-5|AAB52352.1| 196|Caenorhabditis elegans Hypothetical
protein B0261.5 protein.
Length = 196
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 2 ILLFVI--LSLSPAVKKLENGAAAYIQATTVVQHKIKSKKNSKD 127
++ FVI L P+ K + + + +TT+ Q K SK+ SKD
Sbjct: 18 LIFFVIGCLKKKPSQSKKKPSKVSTVTSTTISQEKTNSKRGSKD 61
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 45 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 221
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2318 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2377
Query: 222 ARPAERSRLCYRKKTVKR 275
A S C R T++R
Sbjct: 2378 TLLANNSETCRRNLTIQR 2395
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 45 SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 221
S +V +F +++ T K R++V L YQ++ K + PR + +L G+
Sbjct: 2321 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2380
Query: 222 ARPAERSRLCYRKKTVKR 275
A S C R T++R
Sbjct: 2381 TLLANNSETCRRNLTIQR 2398
>Z70718-5|CAA94670.1| 197|Caenorhabditis elegans Hypothetical
protein C04G2.8 protein.
Length = 197
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 39 SKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQCKSKLRGI 215
S SL +V + RRR S ++S++R +VR+ G + + + R G+ +S R
Sbjct: 68 SPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSR 127
Query: 216 QPARPAERSR 245
+R RSR
Sbjct: 128 SRSRSRSRSR 137
>U14635-13|AAC46654.2| 322|Caenorhabditis elegans Hypothetical
protein C27H5.6 protein.
Length = 322
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 275 TFHCFLTVAKTRTFSRSSW 219
TFHC LTV + +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127
>AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 15 LFFPCHQLSKSLKMVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCG 188
LF + + +V +LT +++ + TK+ + V P + +KKP K+PR
Sbjct: 54 LFIVDRTATANKPVVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGN 113
Query: 189 QCKSKLRGIQPARPAERSR 245
+ +G + A PA + +
Sbjct: 114 AILALKKGPKAAAPAAKKK 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,470,083
Number of Sequences: 27780
Number of extensions: 191129
Number of successful extensions: 459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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