Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d04
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12920.1 68416.m01610 expressed protein 37 0.013
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa... 36 0.017
At5g47050.1 68418.m05798 expressed protein 36 0.023
At4g19700.1 68417.m02893 expressed protein 36 0.023
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa... 36 0.023
At1g60610.2 68414.m06823 expressed protein 36 0.030
At1g60610.1 68414.m06822 expressed protein 36 0.030
At1g59560.1 68414.m06698 expressed protein contains similarity t... 35 0.040
At5g45100.2 68418.m05534 expressed protein 35 0.053
At5g45100.1 68418.m05533 expressed protein 35 0.053
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 35 0.053
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 35 0.053
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 35 0.053
At1g79110.2 68414.m09225 expressed protein 34 0.092
At1g79110.1 68414.m09224 expressed protein 34 0.092
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 33 0.12
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa... 33 0.12
At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger) fa... 33 0.16
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 33 0.16
At2g39810.1 68415.m04890 expressed protein 33 0.16
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 33 0.21
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 32 0.28
At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger) fa... 32 0.28
At1g45976.1 68414.m05206 expressed protein 32 0.28
At5g04460.1 68418.m00443 expressed protein 32 0.37
At1g10650.1 68414.m01207 expressed protein 32 0.37
At4g17680.1 68417.m02641 expressed protein 31 0.49
At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger) fa... 31 0.49
At4g35070.1 68417.m04978 expressed protein 31 0.65
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 31 0.65
At5g64970.1 68418.m08172 mitochondrial substrate carrier family ... 31 0.86
At4g03000.2 68417.m00408 expressed protein contains similarity t... 31 0.86
At4g03000.1 68417.m00407 expressed protein contains similarity t... 31 0.86
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 31 0.86
At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger) fa... 31 0.86
At1g19680.1 68414.m02453 expressed protein 31 0.86
At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 30 1.5
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 30 1.5
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa... 30 1.5
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 29 2.0
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 29 2.0
At2g21380.1 68415.m02544 kinesin motor protein-related 29 2.0
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa... 29 2.0
At1g30860.1 68414.m03774 expressed protein 29 2.0
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At1g17145.1 68414.m02090 expressed protein 29 2.6
At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH) domain... 29 2.6
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At5g01450.1 68418.m00058 expressed protein 29 3.5
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At3g17500.1 68416.m02235 F-box family protein contains Pfam prof... 29 3.5
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger) fa... 29 3.5
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom... 29 3.5
At5g44690.1 68418.m05476 hypothetical protein 28 4.6
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 28 4.6
At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger) fa... 28 4.6
At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger) fa... 28 4.6
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 28 4.6
At1g78420.1 68414.m09138 expressed protein 28 6.1
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putati... 28 6.1
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa... 28 6.1
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 27 8.0
At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa... 27 8.0
>At3g12920.1 68416.m01610 expressed protein
Length = 335
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 457 SACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
S C C + A +V L C H CLC+ C ++ NTCP CKS
Sbjct: 285 SMCRSCGKGEA---SVLLLPCRHMCLCSVCGSSL---NTCPICKS 323
>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 36.3 bits (80), Expect = 0.017
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +1
Query: 352 RRVIDFAGIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSC 531
++++ G R + E+ D ++ T + D+ C + C H C
Sbjct: 282 KQILWIEGERYELQELYGIDNSITQGTAAS-GLEDTGGKECVICLTEPKDTAVMPCRHLC 340
Query: 532 LCTDCDETVNVD-NTCPKCKSGIRYKLKYK 618
LC+DC E + N CP C+ I +K K
Sbjct: 341 LCSDCAEELRFQTNKCPICRQPIHELVKIK 370
>At5g47050.1 68418.m05798 expressed protein
Length = 300
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 442 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
V+ + C CRR A V L C H +CT+CD +V + CP C S
Sbjct: 246 VEMIGPGCRICRRRSAT---VLALPCRHLVMCTECDGSVRI---CPLCLS 289
>At4g19700.1 68417.m02893 expressed protein
Length = 304
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +1
Query: 442 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 585
V AV C RC A +V L C H CLCT C + + TCP C
Sbjct: 247 VTAVGGGCKRCGEREA---SVLVLPCRHLCLCTVCGGSALL-RTCPVC 290
>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9NVW2 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Homo sapiens}; contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 388 TLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVD 567
T E I T+ E + D+ C C ++ + L CGH C+ D+ + ++
Sbjct: 288 TTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYIN 347
Query: 568 NTCPKCKSGI 597
TCP CK I
Sbjct: 348 ATCPLCKYNI 357
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 439 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
N+ + S MRC+ +V + C H LC DCD V CP C+S
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCDVFTGV---CPVCQS 329
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 439 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
N+ + S MRC+ +V + C H LC DCD V CP C+S
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCDVFTGV---CPVCQS 329
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 508 YLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 612
++ CGH C CT C + TCP C+ I+ LK
Sbjct: 303 FVECGHMCCCTPCSLQL---RTCPLCRERIQQVLK 334
>At5g45100.2 68418.m05534 expressed protein
Length = 267
Score = 34.7 bits (76), Expect = 0.053
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 451 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 585
V+ C RC A +V L C H CLCT C + + TCP C
Sbjct: 213 VNGGCKRCGELTA---SVLVLPCRHLCLCTVCGSSALL-RTCPVC 253
>At5g45100.1 68418.m05533 expressed protein
Length = 294
Score = 34.7 bits (76), Expect = 0.053
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 451 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 585
V+ C RC A +V L C H CLCT C + + TCP C
Sbjct: 240 VNGGCKRCGELTA---SVLVLPCRHLCLCTVCGSSALL-RTCPVC 280
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 34.7 bits (76), Expect = 0.053
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 511 LHCGHSCLCTDCDETVNV-DNTCPKCKSGIRYKLKYK 618
L C H C+C+DC + + + N CP C+ I L+ K
Sbjct: 315 LPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIK 351
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 34.7 bits (76), Expect = 0.053
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +1
Query: 340 RRYNRRVIDFAGIRNKT-LEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLH 516
R+ +RV+D A R + E R ++ AV C+ C Y AV ++
Sbjct: 254 RQLQKRVLDAAAKRAELESEGSNGTRESISDSTKKEDAVPDLCVICLEQ--EYNAV-FVP 310
Query: 517 CGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYKTL*H 630
CGH C CT C + +CP C+ R L KT H
Sbjct: 311 CGHMCCCTACSSHL---TSCPLCRR--RIDLAVKTYRH 343
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 34.7 bits (76), Expect = 0.053
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 454 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYK 618
D+ C C ++ + L CGH C D+ + ++ TCP CK I Y+
Sbjct: 322 DAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKSSNYE 376
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 33.9 bits (74), Expect = 0.092
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +1
Query: 412 RNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
R + L E KA CR V L C H CLC C +V +TCP C S
Sbjct: 287 RRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSV---HTCPICTS 343
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 33.9 bits (74), Expect = 0.092
Identities = 21/60 (35%), Positives = 24/60 (40%)
Frame = +1
Query: 412 RNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
R + L E KA CR V L C H CLC C +V +TCP C S
Sbjct: 290 RRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSV---HTCPICTS 346
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 481 SFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 588
++++YP + H GH+ LC+ C V V N CP C+
Sbjct: 68 TYSMYPPIHQCHNGHT-LCSTC--KVRVHNRCPTCR 100
>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHG1a
GI:3822225 from [Arabidopsis thaliana]; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 494
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 463 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
C C+ SF + L CGH ++ + V N CP CKS
Sbjct: 442 CTICQESFKNEEKIATLDCGHEYHAECLEKWLIVKNVCPICKS 484
>At4g31450.1 68417.m04469 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 497
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 454 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
D+ C C+ + + V LHC H+ E + + + CP CK+
Sbjct: 445 DAKCSICQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKA 490
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 505 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLKYK 618
T L C H C+C+ C + + N CP C+ + L+ K
Sbjct: 330 TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 368
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 394 EIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYL--HCGHSCLCTDCDETVNVD 567
E +K ++ L CN V+ C R + V Y+ CGH+ LCT+C + +V
Sbjct: 31 EALKHLASINLRELCNEAKVER-CRATRDLASCGRFVNYVLNPCGHASLCTECCQRCDV- 88
Query: 568 NTCPKCKS 591
CP C+S
Sbjct: 89 --CPICRS 94
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 433 ECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 597
E ++ D+ C C + + L C H CT D+ +++++ CP CK I
Sbjct: 328 ERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNI 382
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 505 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGIRYKLK 612
T L C H C+C+ C + + N CP C+ + L+
Sbjct: 296 TVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLLE 332
>At3g18773.1 68416.m02383 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 220
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +1
Query: 373 GIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCD 549
GI+ K L+++ P E N+ V C+ C F + L C H D
Sbjct: 103 GIKKKALKMLPVVNYSP---EINLPGVGEECVICLSDFVAGEQLRVLPKCNHGFHLRCID 159
Query: 550 ETVNVDNTCPKCK 588
+ + TCPKC+
Sbjct: 160 KWLTQHMTCPKCR 172
>At1g45976.1 68414.m05206 expressed protein
Length = 325
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 466 MRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
M CR + L C H CLC +C+ + ++CP C+S
Sbjct: 277 MMCRFCGVREMCMLLLPCNHMCLCKECERKL---SSCPLCQS 315
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 31.9 bits (69), Expect = 0.37
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 517 CGHSCLCTDC-DETVNVDNTCPKCKSGI 597
CGH C C+ C +E V CP C++ I
Sbjct: 826 CGHMCTCSKCANELVRNGGKCPLCRAPI 853
>At1g10650.1 68414.m01207 expressed protein
Length = 339
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 466 MRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
MRC+ +V + C H LC +CD + CP CKS
Sbjct: 290 MRCKMCNVKEVSVLIVPCRHLSLCKECDVFTKI---CPVCKS 328
>At4g17680.1 68417.m02641 expressed protein
Length = 314
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +1
Query: 442 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKC 585
++ + +C CRR A A L C H LC CD V CP C
Sbjct: 260 IELIGPSCRICRRKSATVMA---LPCQHLILCNGCD--VGAVRVCPIC 302
>At1g49220.1 68414.m05518 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 251
Score = 31.5 bits (68), Expect = 0.49
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 373 GIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCD 549
GI+ K L + P E N+ +D C+ C F + L C H D
Sbjct: 108 GIKKKALRMFPVVSYSP---EMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCID 164
Query: 550 ETVNVDNTCPKCKS 591
+ + TCPKC++
Sbjct: 165 KWLQQHLTCPKCRN 178
>At4g35070.1 68417.m04978 expressed protein
Length = 265
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 451 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
+ S C C + V +L C H C C DC+E + + CP C +
Sbjct: 213 MSSCCCNCGSNGVT--RVLFLPCRHLCCCMDCEEGLLL---CPICNT 254
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 451 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 588
VD C C+ + V L+CGHS + ++ N CP CK
Sbjct: 316 VDRKCSICQDEYEREDEVGELNCGHSFHVHCVKQWLSRKNACPVCK 361
>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 428
Score = 30.7 bits (66), Expect = 0.86
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -3
Query: 423 RQVSVGLNDFQRFVANARKVNYTSVVAPHREHLAAVPIDGRVVQRR*RASQNSKRLRLNA 244
+Q LN F + + +A A P + VV+RR + ++KRL A
Sbjct: 322 KQEGEELNAFDQLELGPMRTLLYGAIAGACSEAATYPFE--VVRRRLQMQSHAKRLSAVA 379
Query: 243 TVVHVVERGG 214
T V ++E+GG
Sbjct: 380 TCVKIIEQGG 389
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 499 AVTYLHCGHSCLCTDCDETVNVD--NTCPKCKSGIRYKLK 612
+V +L C H LC+ C++ + CP C++ I+ +++
Sbjct: 769 SVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 499 AVTYLHCGHSCLCTDCDETVNVD--NTCPKCKSGIRYKLK 612
+V +L C H LC+ C++ + CP C++ I+ +++
Sbjct: 769 SVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 30.7 bits (66), Expect = 0.86
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 505 TYLHCGHSCLCTDCDETVNVD-NTCPKCKSGI 597
T L C H C+C+ C + + N CP C+ +
Sbjct: 254 TVLPCRHMCMCSGCAKLLRFQTNLCPICRQPV 285
>At1g80400.1 68414.m09412 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q90972 RING finger
protein 13 {Gallus gallus}; contains Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 407
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 442 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKSGI 597
+ D++C C + V L C H DC D+ + ++ TCP CK+ +
Sbjct: 348 ISGEDASCCICLTRYGDDEQVRELPCSH-VFHVDCVDKWLKINATCPLCKNEV 399
>At1g19680.1 68414.m02453 expressed protein
Length = 444
Score = 30.7 bits (66), Expect = 0.86
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = +1
Query: 496 PAVTYLHCGH----SCLCTDCDETVNVDNTCPKCKSGIRYKLKYKTL 624
P L CGH +CL T +ET D TCP C KL K L
Sbjct: 292 PIPAVLACGHVYHAACLETMTNETEKYDPTCPICTETQVTKLSRKAL 338
>At4g32600.1 68417.m04642 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING finger protein 38
[Homo sapiens] GI:21666412; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +1
Query: 427 NTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 606
+ E + D+ C C +A + L C H D+ + ++ +CP CKS + K
Sbjct: 351 DNERAISGEDAVCCICLAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEK 410
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 466 MRCRRSFAVYPAVTYLHCGHSCLCTDCD-ETVNVDNTCPKCK 588
++C ++Y + L C H C C +++ +D TCP CK
Sbjct: 349 LKCPICLSLYNSAVSLSCNH-VFCNACIVKSMKMDATCPVCK 389
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 490 VYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 588
+YP + GH+ LC++C + V NTCP C+
Sbjct: 67 MYPPIHQCPNGHT-LCSNCK--LRVQNTCPTCR 96
>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger) domain
Length = 359
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 418 LPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 597
L L TE + A D+ C C S+ + L C H T + + + TCP CK I
Sbjct: 292 LCLATERTLLAEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCPLCKYNI 351
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 472 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 609
C+ F A L C H CLC C + CP C++ I +L
Sbjct: 1008 CKVCFESPTAAILLPCRHFCLCKSCSLAC---SECPICRTKISDRL 1050
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 490 VYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCK 588
+YP + GH+ LC+ C + V NTCP C+
Sbjct: 64 MYPPIHQCPNGHT-LCSSCK--LRVQNTCPTCR 93
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 472 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 609
C+ F A L C H CLC C + CP C++ I +L
Sbjct: 1011 CKVCFESPTATILLPCRHFCLCKSCSLAC---SECPICRTKISDRL 1053
>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 367
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 454 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
D C+ C+ + V L CGH ++ + N+CP CK+
Sbjct: 316 DRKCIICQDEYEAKDEVGELRCGHRFHIDCVNQWLVRKNSCPVCKT 361
>At1g30860.1 68414.m03774 expressed protein
Length = 730
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 499 AVTYLHCGHSCLCTDCDETVN-VDNTCPKCKSGI 597
AV Y CGH C+C C ++ CP C++ I
Sbjct: 686 AVLY-RCGHMCMCLKCANELHWSGGKCPICRAQI 718
>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles:PF05495 CHY zinc
finger, PF00097 zinc finger, C3HC4 type (RING finger)
Length = 291
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +3
Query: 3 KEVAMNTRYATCYVCDELVYLFKKTFSNMSPSAAAFYQQRMAIVKNGIVLCVRCSSKLKI 182
K++ ++ RY TC VC + + + + AA+ +M K +LC C S +
Sbjct: 192 KDMGLHNRY-TCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNV 250
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKS 591
K D+ C C F + L CGH T ++ ++ N TCP C++
Sbjct: 97 KQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 445 KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKS 591
K D+ C C F + L CGH T ++ ++ N TCP C++
Sbjct: 97 KQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRT 146
>At1g17145.1 68414.m02090 expressed protein
Length = 335
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +1
Query: 472 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT-----CPKCKSGIRYKLKYK 618
C F YP++ C +CT+C + N+ CP CK+ Y ++Y+
Sbjct: 63 CPICFLYYPSLNRSRCCMKSICTECFLRMKSPNSAQPTQCPFCKTS-NYAVEYR 115
>At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain A, Calm-N N-Terminal Domain Of Clathrin
Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2
Complex (GP:13399999) {Homo sapiens}
Length = 692
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 459 CMHALQKKFRSLPRRYLSALRTFVFVHRLRRNG 557
C+HAL ++ R + AL+ + +HRL R+G
Sbjct: 71 CIHALSRRLHKT-RNWTVALKALLVIHRLLRDG 102
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = +1
Query: 373 GIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDE 552
G+ +T+ R NT+ A C C+ + + L CGH E
Sbjct: 609 GVNEETISNRLKQRKYKSNTKSPQDA--EPCCVCQEEYTEGEDMGTLECGHEFHSQCIKE 666
Query: 553 TVNVDNTCPKCKS 591
+ N CP CK+
Sbjct: 667 WLKQKNLCPICKT 679
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +1
Query: 508 YLHCGHSCLCTDCDETV-NVDNTCPKCKSGIR 600
+L CGH C C + CP C+ IR
Sbjct: 405 FLSCGHCVACFQCGTRIAETSGFCPVCRKKIR 436
>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 358
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 463 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 597
C+ C F + V L C H+ D+ + ++ CP+C+ +
Sbjct: 235 CLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSV 279
>At3g17500.1 68416.m02235 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 438
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 514 HCGHSCLCTDCDETVNVDNTCPKCKSGIRYKLKYKT 621
HC LCT D+ + V N C +++ + YKT
Sbjct: 98 HCDGLLLCTTKDDRLEVWNPCTGQTRRVQHSIHYKT 133
>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 400 IKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCP 579
I+ R + + E VK + C C+ F V L C H + +N+ NTCP
Sbjct: 119 IEAVRTVIITDEDLVK--EKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCP 176
Query: 580 KCK 588
C+
Sbjct: 177 ICR 179
>At1g49210.1 68414.m05517 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 225
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 373 GIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCD 549
GI+ K L + + + E N+ + C+ C F + L C H D
Sbjct: 108 GIKKKALRMFPV---VSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCID 164
Query: 550 ETVNVDNTCPKCK 588
+ + TCPKC+
Sbjct: 165 KWLQHHLTCPKCR 177
>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
domain-containing protein contains Pfam profiles
PF00168: C2 domain; contains PF02893: GRAM domain;
similar to Chain A, Crystal Structure Of Synaptotagmin
Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
Length = 1859
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 499 AVTYLHCGHSCLCTDCDETVNVDN--TCPKCKSGIRYKLK 612
+V +L C H LC C++ + CP C+ I +++
Sbjct: 777 SVIFLPCAHQVLCFKCNQLHEKEGMMDCPSCRGTIHRRIQ 816
>At5g44690.1 68418.m05476 hypothetical protein
Length = 684
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +1
Query: 454 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN-TCPKCKSGI 597
DS C F + CGH C C C + N CP C + I
Sbjct: 626 DSLERNCSICFEMPIDSLLYRCGHMCTCLKCAHELQWSNMKCPICMAPI 674
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 517 CGHSCLCTDC-DETVNVDNTCPKCKS 591
C H C TDC DE + TCP C++
Sbjct: 113 CNH-CFHTDCVDEWLRTSATCPLCRN 137
>At3g61180.1 68416.m06847 zinc finger (C3HC4-type RING finger)
family protein low similarity to RNF6 protein [Mus
musculus] GI:20530241; contains Pfam profile PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 379
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 400 IKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCP 579
I T + TE + + D+ C C ++ + L C H D+ + ++ TCP
Sbjct: 302 IMTGLDTESQTERMLLSEDAECSICLCAYEDGVELRELPCRHHFHSLCVDKWLRINATCP 361
Query: 580 KCKSGI 597
CK I
Sbjct: 362 LCKFNI 367
>At1g73950.1 68414.m08564 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 466
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 472 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 609
CR F +V L C H LC +C + CP C+ I +L
Sbjct: 419 CRVCFEREISVVLLPCRHRVLCRNCSDKC---KKCPFCRITIEERL 461
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 472 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYKL 609
CR F ++ L C H LC C + TCP C+ I +L
Sbjct: 420 CRVCFEKDISLVLLPCRHRVLCRTCADKC---TTCPICRIDIEKRL 462
>At1g78420.1 68414.m09138 expressed protein
Length = 401
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +1
Query: 472 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT-----CPKCKSGIRYKLKYK 618
C F YP++ C +CT+C + N+ CP CK+ Y ++Y+
Sbjct: 59 CPICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTP-NYAVEYR 111
>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC1) strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 967
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 291 AVRLDRRSARLQGVHGAALQQTCN*LCGHSQQNAGNH 401
A+ LDR LQ +HG L++T L HS + G H
Sbjct: 35 ALLLDRFLDILQDLHGEDLRETVQELYEHSAEYEGKH 71
>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 645
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +1
Query: 463 CMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
C C+ + + L CGH E + N CP CK+
Sbjct: 592 CCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPICKT 634
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 436 CNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
C K D C C+ + V L C H + + + + N CP CK+
Sbjct: 459 CLNKDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKT 510
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +1
Query: 436 CNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKS 591
C K D C C+ + V L C H + + + + N CP CK+
Sbjct: 459 CLNKDDDVKCSICQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKT 510
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 463 CMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKS 591
C C+ + + L CGH DC + V + N CP CK+
Sbjct: 656 CCICQEEYVEGDNLGTLKCGHE-FHKDCIKQWVMIKNLCPICKT 698
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 463 CMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKS 591
C C+ + + L CGH DC + V + N CP CK+
Sbjct: 656 CCICQEEYVEGDNLGTLKCGHE-FHKDCIKQWVMIKNLCPICKT 698
>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
family protein very low similarity to RING-H2 finger
protein RHG1a [Arabidopsis thaliana] GI:3822225;
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger)
Length = 343
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 454 DSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 597
D+ C C S+ + L C H T + + ++ TCP CK I
Sbjct: 289 DADCCICLSSYEDGAELVSLPCNHHFHSTCIVKWLKMNATCPLCKFNI 336
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 149 HNTVFNNGHTLLVKRSGRRRHVTKRFFKQVHQLVANIASSVS 24
HN+V+N H+L +R G R + K V L+ + +S+S
Sbjct: 541 HNSVWNGPHSLFRRRGGSNR--SSALHKAVESLMNELNNSLS 580
>At1g49200.1 68414.m05516 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Frame = +1
Query: 373 GIRNKTLEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYL-HCGHSCLCTDCD 549
GI K L + P E N+ + C+ C F + L C H D
Sbjct: 109 GINKKALRMFPVVSYSP---EMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCID 165
Query: 550 ETVNVDNTCPKCK 588
+ + TCPKC+
Sbjct: 166 KWLQQHLTCPKCR 178
>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 634
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 415 NLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKS 591
NLP +T C+ C + + + +L C H DC D + +CP CKS
Sbjct: 574 NLPEST-VQTDNFQETCVICLETPKIGDTIRHLPCLHK-FHKDCIDPWLGRSKSCPVCKS 631
Query: 592 GI 597
+
Sbjct: 632 SV 633
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,844
Number of Sequences: 28952
Number of extensions: 276500
Number of successful extensions: 1071
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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