Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19d03
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.45
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 28 1.0
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 1.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 1.8
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 5.5
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 26 5.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 26 5.5
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 7.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.7
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.7
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 9.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.7
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 29.5 bits (63), Expect = 0.45
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 73 KSAAYDPLKAPNYF--EEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDSA 234
+ A Y L+APN+F ++ H + + E RR F +L E I K + A
Sbjct: 667 EKAGYHTLRAPNFFYSQQVKHYKQDLFPANSEAARRISFFAQSLAESIPKTSSIDA 722
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 16 LCKKKMNKILFYLFVYAVVK-SAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQH 192
L K K+ K+L+ +FV++ + DP A +FE F + ++ L + KI
Sbjct: 77 LYKPKLQKVLYPIFVHSYLDLLQKNDPEMAIYFFESFRIEHEVLHGYDIRALAQLKI-AS 135
Query: 193 NLNEIINKNQNDSAKYEIN 249
++ EI KY IN
Sbjct: 136 DVEEIEIAQLYRKNKYRIN 154
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.5 bits (58), Expect = 1.8
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Frame = +1
Query: 208 INKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILL-DQPPGKGPLEFDW 384
I+ + +Y + DL +DE + + GL C +L D K L +
Sbjct: 1973 IHGSDGKDYQYVLKGHEDLRQDERVMQLFGL---------CNTLLTTDSETFKRRLNIE- 2022
Query: 385 RRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMI----DCD 534
R + N G+ G TL L +F K N L+NL + M+ DCD
Sbjct: 2023 -RYTVIPLSPNSGLLGWVPHSDTLHFLIKEFRSKRNILLNLEHRMMLQMAPDCD 2075
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 16 LCKKKMNKILFYLFVYAVVKSAAYDPLK-APNYFEEFVHRFNKNYSSEVEKLRRFKIFQH 192
L K ++++ILF +FV++ + + D + A ++E F + +V+ L+ + H
Sbjct: 74 LYKAELHRILFPIFVHSYLNLLSQDHYEAAKQFYELFKDDHTDLHDFDVKNLKSLSLPSH 133
Query: 193 NLNEIINKNQNDSAKYEINKFSDLSKD 273
+ E Q KY+++ FS ++ D
Sbjct: 134 -VAEDRTAQQYRQNKYQLH-FSRITFD 158
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +1
Query: 196 LNEIINKNQNDSAKYEINKFSDLSKDETIAKYTGLSLPTQTQNFCKVILLDQP 354
L++++ K + + E++ +S D+ I + + LP+ N K D+P
Sbjct: 294 LSDLVEKQRRKKVEQEVSDKGWVSADKMINQRLSIFLPSALNNISKPESTDRP 346
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 222 LVFIDNFI*IVLENFESSQFFNFATIIFVESMNKFFKIIRRFQRIVG 82
+V + N I E E + F F+ESMN+ FK I +++VG
Sbjct: 54 VVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVG 100
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 273 VFGQIREFVYFIFGRIVLVFIDNF 202
+FG I +FVY+ + VLV DNF
Sbjct: 1027 IFGVIGKFVYWAYVAPVLVSPDNF 1050
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 91 PLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIIN 213
P K +YF + KN SS+++ ++Q NE+ N
Sbjct: 323 PSKIQDYFYDVHSLLLKNLSSKIKLCNHILMYQATFNEVKN 363
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 428 HIP*FFTLVTLLRRRQSNSRGPLPGGWSKSMT 333
H+ + L +R++ + +GPLP GW ++
Sbjct: 222 HLLEHYPLALSVRQQVAVEKGPLPAGWEMRLS 253
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/88 (21%), Positives = 37/88 (42%)
Frame = +1
Query: 70 VKSAAYDPLKAPNYFEEFVHRFNKNYSSEVEKLRRFKIFQHNLNEIINKNQNDSAKYEIN 249
+K A D LK N + + +NK + EK++ + + L + + +++ Y+ N
Sbjct: 933 LKLALQDELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESYRSNQFNYQNN 992
Query: 250 KFSDLSKDETIAKYTGLSLPTQTQNFCK 333
D ++ E K L +F K
Sbjct: 993 LVQDKNELEERLKEIQKELEVYNNHFMK 1020
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 157 VEKLRRFKIFQHNLNEIINKNQNDSAKYEINKFSDL-SKDETIAKYTGLSLPTQTQN 324
V R ++F H+LNE +KN++ + ++ +L S D+ ++ + LS + N
Sbjct: 119 VNNYSRSQLFNHSLNE--SKNRDLTEQHPFVTLDELNSNDQVLSSFGDLSSTFEMPN 173
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 578 SKPSLKWAAYSW 613
SKPSLKW A W
Sbjct: 381 SKPSLKWLATKW 392
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 410 TLVTLLRRRQSNSRGPLPGGWSKSMT 333
T+ +L++ + + GPLP GW +T
Sbjct: 350 TVGSLMQPQSLSHLGPLPSGWEMRLT 375
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 151 SEVEKLRRFKIFQHNLNEIINKNQN-DSAKYEINKFSDLSK 270
S +EKLR+ ++Q I+N N D KY ++ S L+K
Sbjct: 134 SNIEKLRKL-VYQLTNISILNSLDNLDKVKYLLHDSSSLTK 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,955
Number of Sequences: 5004
Number of extensions: 53770
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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