Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d02
         (593 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              30   1.2  
SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   4.9  
SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   28   6.5  
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)                    28   6.5  
SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)          28   6.5  
SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_48395| Best HMM Match : MAM (HMM E-Value=0)                         28   6.5  
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   6.5  
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 105 ICAIFL*LDLRQSVFFVHKTRHVRAICQRMQKSNHRIAPRGSRARVEYFERAMQRF 272
           +C ++  L + Q V F H  R+   + ++M K  H +A       +E     ++RF
Sbjct: 335 LCNMYGVLSIGQCVVFCHTRRNAAWLAEKMVKEGHAVALLSGEITIEQRIAVLERF 390


>SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 150 FVHKTRHVRAICQRMQKSNHRI 215
           FVH T HVRA+ QR++    R+
Sbjct: 689 FVHDTFHVRALSQRLRDGQRRV 710


>SB_23913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 396 FETLFREFAQQSVSGSGVGTPQRLSFHHEQV 488
           FE   +++AQQ   G      QR++ HHE+V
Sbjct: 819 FEKAAQDYAQQKQEGFNARRQQRVTTHHERV 849


>SB_17844| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1431

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/85 (17%), Positives = 36/85 (42%)
 Frame = +1

Query: 73  VINENNLITQIFVQFFYNLICDKAYSLYTKRDMCVPFVKECKKATIGLRQEDHERVLSIL 252
           +++    +T +F+ +   L+            M V F K+C+  T+ +     E+ +++ 
Sbjct: 480 IVDNPKFMTAVFILYCKTLLVKGGNKAVWGGGMLVEFQKQCQNNTVKISNSIFEKNMALT 539

Query: 253 NAQCNGFSTAANGNRLLLPFKNFMI 327
                  ST    N  L+P + +++
Sbjct: 540 AGGALRMSTIVEENPNLVPNQYYIV 564


>SB_53890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 172 TCRVLCTKNTLCRKSSYRK 116
           TC  LCT+NT CR  ++ K
Sbjct: 54  TCAHLCTRNTECRSINFEK 72


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 207 GCFFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 106
           G  F      ++HV  C Q+    ANQVIE +H+
Sbjct: 378 GLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411


>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
          Length = 504

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 172 TCRVLCTKNTLCRKSSYRK 116
           TC  LCT+NT CR  ++ K
Sbjct: 40  TCAHLCTRNTECRSINFEK 58


>SB_13659| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00051)
          Length = 1024

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 150  FVHKTRHVRAICQRMQKSNHRIAP 221
            FVH T HVRA+ QR  +   R  P
Sbjct: 984  FVHDTFHVRALSQRRLRDGQRRVP 1007


>SB_52352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 ANSLNSVSNKSRSIRWTLFC*PFSC*YCGP 332
           A SLN +S K+  + W L C PF C Y  P
Sbjct: 534 AVSLN-MSQKAHPVVWQLSCLPFDCIYVMP 562


>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
          Length = 901

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 436 DTLCWANSLNSVSNKSRSIRWT 371
           D   WA  LN   NK R IRWT
Sbjct: 711 DMCGWAQELNPQQNKFRWIRWT 732


>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1706

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -2

Query: 526 SIYELTD*CFRPNTCS**NDKRCGVPTPLPDTLCWANSLNS 404
           S   LT      NTC     K C +P P P   C ANS NS
Sbjct: 48  SFMSLTRNVTTSNTCGTTRAKYCELPGPEPCYYCDANSSNS 88


>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 207 GCFFAFFDKWHAHVAFCVQRIRFVANQVIEKLHK 106
           G  F      ++HV  C Q+    ANQVIE +H+
Sbjct: 378 GLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411


>SB_17141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 159 KTRHVRAICQRMQKSNHRIAPRGSRARVEYFERAMQRFLH 278
           KT   +  C  + +SNH  +PR  R    Y  R   +F H
Sbjct: 480 KTATEKKSCPSISRSNHDASPRDYRMPTHYMRRFGGQFHH 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,735,064
Number of Sequences: 59808
Number of extensions: 342519
Number of successful extensions: 764
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)