Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d02
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.56 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.1  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 486 LAHDETTNVAEFQ---LRYRIRFVGQTL*IVSQIKADQYG 376
           L + E +++ EF+    +YR + +G+T   +  ++A +YG
Sbjct: 21  LVYGEISDIDEFREMTSKYRKKCIGETKTTIEDVEATEYG 60


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 377 VDAILLTFFMLVLRPIFIIKFLN 309
           V+  +  FFM++  PIFI    N
Sbjct: 88  VNLAICDFFMMIKTPIFIYNSFN 110


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 263 HCAFKILNTRS*SSWRNPMVAFLHSLT 183
           H  F I NT       NPM+A L +L+
Sbjct: 175 HVQFLITNTSGPGVVSNPMIAELETLS 201


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 263 HCAFKILNTRS*SSWRNPMVAFLHSLT 183
           H  F I NT       NPM+A L +L+
Sbjct: 175 HVQFLITNTSGPGVVSNPMIAELETLS 201


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 472 NDKRCGVPTPLPDTLCW 422
           N + C  PT   + LCW
Sbjct: 144 NTRYCLTPTERLEALCW 160


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 472 NDKRCGVPTPLPDTLCW 422
           N + C  PT   + LCW
Sbjct: 197 NTRYCLTPTERLEALCW 213


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 153 VHKTRHVRAICQRMQK 200
           +HK  ++ A+  RMQK
Sbjct: 373 IHKNEYMLALSNRMQK 388


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 267 VALRVQNTQHALVILLAQSDGCFFAF 190
           V L  Q T   LV+    SDG  FAF
Sbjct: 756 VTLDKQETGVTLVVQEISSDGLKFAF 781


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,398
Number of Sequences: 438
Number of extensions: 3343
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)