Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d02
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43020.1 68415.m05339 amine oxidase family protein similar to...    28   4.1  
At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein ...    27   7.1  
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    27   9.4  
At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase fami...    27   9.4  
At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.4  
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family...    27   9.4  
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family...    27   9.4  

>At2g43020.1 68415.m05339 amine oxidase family protein similar to
           polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
           profile PF01593 amine oxidase, flavin-containing
          Length = 490

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 396 FETLFREFAQQSVSGSGVGTPQRLSFHHEQVFGRK 500
           FE    E+ Q++++  GVG   ++  H E+VF  K
Sbjct: 287 FEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPK 321


>At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 706

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -2

Query: 280 RWRNRCIARSKYSTRARDPLGAIRWLLFCIL*QMARTCRVLCTKNTL 140
           +W N C+ R  Y T       ++ WL+      +A   RV   K T+
Sbjct: 203 KWLNNCVGRKNYVTFVSLMSASLLWLIIEAAVGIAVIVRVFVNKQTM 249


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 317 FLNGSNSLFPLAAVEKPLHCAFKILNTRS*SSWRNPMVAFLHSLTNGTHMSRFVY 153
           +L G+  +F   AV+KP+ C   ++        R+ +  F+  +T G     FV+
Sbjct: 234 WLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVF 288


>At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase family
           protein similar to SP|P25539 Riboflavin biosynthesis
           protein ribD [Includes:
           Diaminohydroxyphosphoribosylaminopyrimidine deaminase
           (EC 3.5.4.26) (Riboflavin-specific deaminase);
           5-amino-6-(5- phosphoribosylamino)uracil reductase (EC
           1.1.1.193) (HTP reductase)] {Escherichia coli}; contains
           Pfam profile PF00383: Cytidine and deoxycytidylate
           deaminase zinc-binding region
          Length = 426

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 296 LFPLAAVEKPLHCAFKILNTRS*SSWRNPMVA 201
           +F L +++ P HC FK L+ +S + + NP++A
Sbjct: 32  IFNLTSLQSPNHCFFKRLH-KSQTGFSNPVLA 62


>At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   EDPWFGMPLMLYVLLRTDYKNESDVINE 84
           E  W G+PL+ Y LL   + N   V+++
Sbjct: 377 ESVWCGLPLLCYPLLTDQFTNRKLVVDD 404


>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 7   PWFGMPLMLYVLLRTDYKNESDVINEN 87
           PWFG P+ +  L   DY     +++EN
Sbjct: 378 PWFGRPISVLSLSECDYTFGRVIVSEN 404


>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 7   PWFGMPLMLYVLLRTDYKNESDVINEN 87
           PWFG P+ +  L   DY     +++EN
Sbjct: 378 PWFGRPISVLSLSECDYTFGRVIVSEN 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,935,782
Number of Sequences: 28952
Number of extensions: 224724
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)