Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d01
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4J9K6 Cluster: Putative uncharacterized protein; n=1; ...    34   0.72 
UniRef50_Q4HPI7 Cluster: Response regulator; n=11; Campylobacter...    33   1.7  
UniRef50_A3HUC3 Cluster: Putative uncharacterized protein; n=1; ...    32   3.8  
UniRef50_P46918 Cluster: Minor teichoic acid biosynthesis protei...    32   3.8  
UniRef50_Q1MNU1 Cluster: NA; n=1; Lawsonia intracellularis PHE/M...    31   5.1  
UniRef50_Q3LVZ9 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  
UniRef50_O45188 Cluster: Putative uncharacterized protein; n=2; ...    31   8.9  
UniRef50_P29539 Cluster: Protein RIF1; n=2; Saccharomyces cerevi...    31   8.9  

>UniRef50_A4J9K6 Cluster: Putative uncharacterized protein; n=1;
           Desulfotomaculum reducens MI-1|Rep: Putative
           uncharacterized protein - Desulfotomaculum reducens MI-1
          Length = 144

 Score = 34.3 bits (75), Expect = 0.72
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 152 NIMIVQLIKSHFFLVEPQLGIVGLFTGGDVKYQSQXXXXXXTFDCIIIKLVQY 310
           N  + +L+ SHF L +  + I G+F G   KY +        FDCII+ ++ Y
Sbjct: 80  NFFVAKLLFSHFKLPKRMMKIFGIFEGYGYKYLT-----ASLFDCIIMAVISY 127


>UniRef50_Q4HPI7 Cluster: Response regulator; n=11;
           Campylobacter|Rep: Response regulator - Campylobacter
           upsaliensis RM3195
          Length = 299

 Score = 33.1 bits (72), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 97  FTYMNECTTSFCYVQFTLINTYEK 26
           F+YMNEC+   CYV  ++ N+ +K
Sbjct: 159 FSYMNECSVELCYVDLSVPNSVDK 182


>UniRef50_A3HUC3 Cluster: Putative uncharacterized protein; n=1;
           Algoriphagus sp. PR1|Rep: Putative uncharacterized
           protein - Algoriphagus sp. PR1
          Length = 381

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +2

Query: 71  GCTLVHVSKRKTNNFLYVV*KETSFNNNIMIVQLIKSHFFLVEPQLGIVGLFTGGDVKY 247
           G  L+  S ++TNN L  +  E S++ + ++V   K HFF +   LGI  L  G  + Y
Sbjct: 10  GALLIGCSSKETNNELNQINIEFSYSIDTVMVD-AKDHFFFLNWGLGISDLTQGKKLLY 67


>UniRef50_P46918 Cluster: Minor teichoic acid biosynthesis protein
           ggaB; n=1; Bacillus subtilis|Rep: Minor teichoic acid
           biosynthesis protein ggaB - Bacillus subtilis
          Length = 900

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 244 FDVTSGE*TNNTQLRFH*EKM*FN*LYNHYIIIKRCFFLYNIQKIICLPFTYMNECTTSF 65
           F +T G+    T+LRF       N LYN Y+  K   F YN +K++     + N     F
Sbjct: 437 FFITKGKKRKLTKLRFFKYSGLSNDLYNTYVAKKDYIFYYNYKKLMFKKNNFKNRFIKEF 496

Query: 64  CYVQ 53
            +++
Sbjct: 497 RFLK 500


>UniRef50_Q1MNU1 Cluster: NA; n=1; Lawsonia intracellularis
           PHE/MN1-00|Rep: NA - Lawsonia intracellularis (strain
           PHE/MN1-00)
          Length = 595

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 169 LYNHYIIIKRCFFLYNIQKIICLPFTYMNECTTSFCYVQFTLI 41
           L++ +I   R  ++Y++QKI+ + F Y  + TT F Y  F ++
Sbjct: 14  LFSKFIYEVRNIYIYDLQKIVLIQFFYCKKYTTIF-YKTFIIV 55


>UniRef50_Q3LVZ9 Cluster: Putative uncharacterized protein; n=1;
           Bigelowiella natans|Rep: Putative uncharacterized
           protein - Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 127

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 92  SKRKTNNFLYVV*KETSFNNNIMIVQLIKSHFFLVE 199
           SK   N  L +  ++ SF+N +++++LI +H+F +E
Sbjct: 61  SKFSNNIVLSLKKQDNSFSNFLLLIKLISTHYFFIE 96


>UniRef50_O45188 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 577

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 104 TNNFLYVV*KETSFNNNIMIVQLIKSHFFLVEPQLGIV 217
           T  F YV   +   N N++I      HF L EP LG +
Sbjct: 468 TQYFTYVAGAQIDQNGNVIIADAKNHHFKLFEPSLGFI 505


>UniRef50_P29539 Cluster: Protein RIF1; n=2; Saccharomyces
            cerevisiae|Rep: Protein RIF1 - Saccharomyces cerevisiae
            (Baker's yeast)
          Length = 1916

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 77   TLVHVSKRKTNNFLYVV*KETSFNNNIMIVQLI 175
            TL+HVS    NNF+Y +    S N N + V LI
Sbjct: 917  TLLHVSMWSNNNFIYFIQSYVSKNENKLNVDLI 949


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,110,881
Number of Sequences: 1657284
Number of extensions: 5450884
Number of successful extensions: 10385
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10381
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)