Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d01
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    26   2.1  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    24   6.5  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    24   6.5  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    24   6.5  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 107 LSSVYLHERVYNLILLCAVYINKHL*KELIM 15
           L +  +HE  YN I+ C V I K L   ++M
Sbjct: 269 LENAGIHEATYNSIMKCDVDIRKDLYGNVVM 299


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 359 NFCKYLIFFIIVDLYIYI 306
           N+ +Y I   IVDLYIY+
Sbjct: 291 NYLQYRIIGGIVDLYIYV 308


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 140 MFLSIQHTKNYLSSVYLHERVYNLILLCAVYIN 42
           +FL +  +K+ +        ++N +L C VYI+
Sbjct: 842 VFLKLHWSKSAIKKYETKASIFNELLFCLVYIS 874


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 140 MFLSIQHTKNYLSSVYLHERVYNLILLCAVYIN 42
           +FL +  +K+ +        ++N +L C VYI+
Sbjct: 842 VFLKLHWSKSAIKKYETKASIFNELLFCLVYIS 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,108
Number of Sequences: 5004
Number of extensions: 26136
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)