Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d01
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   1.2  
SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05)                   27   4.8  

>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 202  SVGYCWFIHRR*RQISVTKIKKIKNI*LYHNKTC 303
            S GYCW + R   ++  TK+K +     Y N  C
Sbjct: 2683 SEGYCWCVERYGNELPRTKVKGVPECIHYVNALC 2716


>SB_22423| Best HMM Match : ASC (HMM E-Value=1.8e-05)
          Length = 348

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 178 FN*LYNHYIIIKRCFFLYNIQKIICLPFTYMNECTTSFCYVQFTLINTYEK 26
           FN  Y+    IK+C + Y ++K  C P     E    FC V+      Y K
Sbjct: 183 FNLPYSLSACIKQCLYDYGMEKCNCQPLFKFKE-NEEFCSVKDVFECIYPK 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,784,112
Number of Sequences: 59808
Number of extensions: 169917
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)