Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d01
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047661-6|AAC04438.2|  577|Caenorhabditis elegans Hypothetical ...    31   0.34 
AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical ...    31   0.34 
AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical ...    28   2.4  
U27312-5|AAA68249.2|  121|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    26   7.3  

>AF047661-6|AAC04438.2|  577|Caenorhabditis elegans Hypothetical
           protein M70.5 protein.
          Length = 577

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 104 TNNFLYVV*KETSFNNNIMIVQLIKSHFFLVEPQLGIV 217
           T  F YV   +   N N++I      HF L EP LG +
Sbjct: 468 TQYFTYVAGAQIDQNGNVIIADAKNHHFKLFEPSLGFI 505


>AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical
           protein Y73B3A.4 protein.
          Length = 569

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 104 TNNFLYVV*KETSFNNNIMIVQLIKSHFFLVEPQLGIV 217
           T  F YV   +   N N++I      HF L EP LG +
Sbjct: 460 TQYFTYVAGAQIDQNGNVIIADAKNHHFKLFEPSLGFI 497


>AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.1 protein.
          Length = 422

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 115 KIICLPFTYMNECTTSFCYVQFTLINTY 32
           K+ CLPF ++   ++ FCY  +    T+
Sbjct: 27  KVFCLPFMFLIRRSSCFCYASWCWSETF 54


>U27312-5|AAA68249.2|  121|Caenorhabditis elegans Hypothetical
           protein F26A1.9 protein.
          Length = 121

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 142 RCFFLYNIQKIICLPFT 92
           RC  LYN+ ++IC PF+
Sbjct: 10  RCLHLYNLPQVICDPFS 26


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 74   CTLVHVSKRKTNNFLYVV*KETSFNNNIMIVQLIKSHFFLVEPQLGIVGLFTGGDV 241
            CT+ HV   + +  L  V K  S        Q+I S FF+V+  L  +G+   G V
Sbjct: 2190 CTIFHVPTIEKSELLSKVSKIISDCKVDEAAQIIVSTFFIVKKYLQSIGIALYGTV 2245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,752,095
Number of Sequences: 27780
Number of extensions: 142898
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)