Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d01
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              24   0.66 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   2.6  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 92  LHERVYNLILLCAVYINKHL 33
           +HE  YN I+ C V I K L
Sbjct: 49  IHETTYNSIMKCDVDIRKDL 68


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 130 LYNIQKIICLPF-TYMNECTTSFCYVQFTLIN 38
           ++N   I+C+PF TY   C     +  + ++N
Sbjct: 141 VFNSGTILCVPFTTYTPVCEYDHTWWPYDILN 172


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 110 YLSSVYLHERVYNLILL 60
           YLS + LH+   +L+L+
Sbjct: 329 YLSDIPLHDATRDLVLM 345


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 39  FINVNCT*QNEVVHSFM*VNGRQIIF 116
           F+NVN     E VHSF    G   ++
Sbjct: 913 FMNVNMLDTYESVHSFPTETGLPFVY 938


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 110 YLSSVYLHERVYNLILL 60
           YLS + LH+   +L+L+
Sbjct: 329 YLSDIPLHDATRDLVLM 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,085
Number of Sequences: 438
Number of extensions: 1869
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)