Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19d01
         (369 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2...    29   1.3  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    28   2.2  
At3g17700.1 68416.m02259 cyclic nucleotide-binding transporter 1...    27   2.9  
At1g77130.1 68414.m08985 glycogenin glucosyltransferase (glycoge...    27   3.9  
At4g09780.1 68417.m01607 meprin and TRAF homology domain-contain...    26   9.0  

>At3g17690.1 68416.m02258 cyclic nucleotide-binding transporter 2 /
           CNBT2 (CNGC19) identical to cyclic nucleotide-binding
           transporter 2 (CNBT2) GI:8131900 from [Arabidopsis
           thaliana]; member of the cyclic nucleotide-gated channel
           family (CNGC)- see PMID:11500563
          Length = 743

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 169 VN*ITFFLSGTSVGYCWFI 225
           +N +TF L+G +VG CW++
Sbjct: 335 INLLTFMLAGHAVGSCWYL 353


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
 Frame = -2

Query: 164 QSLYYY*TMFLSIQHTKN----YLSSVYLHERVYNLI 66
           +SL+YY T+F S++   N     +S VYL +++ NL+
Sbjct: 468 ESLHYYSTLFDSLEGVPNSQDKVMSEVYLGKQICNLV 504


>At3g17700.1 68416.m02259 cyclic nucleotide-binding transporter 1 /
           CNBT1 (CNGC20) identical to cyclic nucleotide-binding
           transporter 1 (CNBT1) GI:8131898 from [Arabidopsis
           thaliana]; member of the cyclic nucleotide-gated channel
           (CNGC) family- see PMID:11500563
          Length = 764

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 169 VN*ITFFLSGTSVGYCWFI 225
           +N +TF L+G  VG CW++
Sbjct: 369 INLLTFMLAGHVVGSCWYL 387


>At1g77130.1 68414.m08985 glycogenin glucosyltransferase
           (glycogenin)-related contains similarity to glycogenin-1
           from Mus musculus [SP|Q9R062], Rattus norvegicus
           [SP|O08730], Homo sapiens [SP|P46976]
          Length = 618

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 137 TSFNNNIMIVQLIKSHFFLVEPQLGIVGLFTGGDVKYQSQ 256
           T FN+ +M+V+   S F L+   +  V  + GGD  Y ++
Sbjct: 405 TLFNSGLMVVEPSNSTFQLLMDNINEVVSYNGGDQGYLNE 444


>At4g09780.1 68417.m01607 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein low similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 443

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 133 FLYNIQKIICLPFTYMNECTTSFCYVQFTLINT 35
           + Y  +   CLP+ Y    +T FC  +F ++ T
Sbjct: 24  YFYICKSHFCLPYIYTTLKSTIFCPKKFIIMET 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,828,959
Number of Sequences: 28952
Number of extensions: 115752
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)