Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c24
(424 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23) 117 5e-27
SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_38972| Best HMM Match : PIP5K (HMM E-Value=0) 28 2.8
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1) 28 2.8
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19) 27 4.8
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4) 27 6.4
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0) 27 6.4
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2) 27 8.5
>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
Length = 131
Score = 117 bits (281), Expect = 5e-27
Identities = 65/120 (54%), Positives = 76/120 (63%)
Frame = +2
Query: 47 KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 226
KVK ELR K + LRVAKVTGG ASKLSKI+VVRK++ARV V
Sbjct: 11 KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70
Query: 227 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 406
Q + NLR Y+ KKY PLDLR K TRAMR++LTK EA KT K+ +K + F R YAVK
Sbjct: 71 QTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKKLAHFSLRKYAVK 130
>SB_47982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 31.1 bits (67), Expect = 0.39
Identities = 22/57 (38%), Positives = 31/57 (54%)
Frame = +2
Query: 161 ASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTK 331
ASK SK RV R IA++ H ++ +RN N K +R K+RAM+K T+
Sbjct: 588 ASKKSKKRVGRPDIAQLMRAKHFGIQTEVRN--LNSKCLIFGVRKFKSRAMKKMQTR 642
>SB_38972| Best HMM Match : PIP5K (HMM E-Value=0)
Length = 426
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 194 KAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 307
KA ++V + H K NL +H+K K+Y P+ R + R
Sbjct: 70 KAYSKVRVDNHLFNKENLPSHFKFKEYCPMVFRNLRER 107
>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
Length = 311
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 260 KNKKYKPLDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 400
+N+K DL K T +M + KH AK+ R E++ S PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151
>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
Length = 454
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +2
Query: 230 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVY 397
K K R +NK Y +DL+ +++ A+ K + + IR++ +F P +Y
Sbjct: 18 KWKRQTRGKQENKLYSFVDLKGEQSDALLVEAFKKGGLDEVNRLIREEGVFLPYLY 73
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 248 RNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIR 367
+ +K K+ K D + +K+RA + LTK + +IK E+R
Sbjct: 289 KKKHKKKEKKEKDEK-RKSRAEDEGLTKEQLEIKEANELR 327
>SB_4336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 206 RVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI--KTRKEIRKKS 376
R +V + VN+R+ NKK+K ++ R++ M+ + +K+ K K + K+S
Sbjct: 23 RPKVVNMRSKVVNMRSKVVNKKFKAVNKRSRAVN-MKSTVVSMRSKVVDKRSKSVDKRS 80
>SB_9162| Best HMM Match : Ribosomal_L19e (HMM E-Value=3.4)
Length = 160
Score = 27.1 bits (57), Expect = 6.4
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +2
Query: 125 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKT 304
TN V ++ G + + R ++K R+ +++K R K K K R++K
Sbjct: 24 TNAVVFVLSQGKIRSIERQRQIKKLTKRI-----KRIKALNRGKRKKKHSK----RSQKL 74
Query: 305 RAMRKALTKHEAKIKTRKEIRKK 373
R MR+ L + + K K+ ++ R+K
Sbjct: 75 REMRRWLRRFKQKGKSDRDARRK 97
>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 726
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 393 TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKS 283
TL G R F L++ S LV+ RIAR+F KS
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKS 547
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 280 FRFKSQEDPCYAQGSY*TRSKDQDEERD 363
F S DP Y G Y D+DEE D
Sbjct: 1207 FNVTSGSDPDYGNGDYDYDENDEDEEGD 1234
>SB_21046| Best HMM Match : DUF331 (HMM E-Value=3.2)
Length = 245
Score = 26.6 bits (56), Expect = 8.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 128 NLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTR 307
N+ K G V S + V ++ I ++ + KMK + +HY++ L AK T
Sbjct: 79 NVTSYKYLGIVFSAIGNFNVAKEEIKKIALKALYKMKKEMGSHYRDNLKLATRLFAKLTN 138
Query: 308 AMRKALTKH 334
+ K+
Sbjct: 139 KSKCRSVKY 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,270
Number of Sequences: 59808
Number of extensions: 166464
Number of successful extensions: 517
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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