Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c24
(424 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D) ribo... 122 1e-28
At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) vari... 122 1e-28
At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) vari... 122 1e-28
At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B) 122 1e-28
At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) simi... 121 2e-28
At5g25330.1 68418.m03005 hypothetical protein contains Pfam prof... 29 1.3
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 29 1.3
At4g14350.2 68417.m02211 protein kinase family protein contains ... 27 4.0
At4g14350.1 68417.m02210 protein kinase family protein contains ... 27 4.0
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 27 4.0
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 27 6.9
>At5g02610.1 68418.m00197 60S ribosomal protein L35 (RPL35D)
ribosomal protein L35- cytosolic, Arabidopsis thaliana,
PIR:T00549
Length = 123
Score = 122 bits (294), Expect = 1e-28
Identities = 64/122 (52%), Positives = 78/122 (63%)
Frame = +2
Query: 41 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 220
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 221 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 400
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K+ FP R YA
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120
Query: 401 VK 406
+K
Sbjct: 121 IK 122
>At3g55170.2 68416.m06128 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 122 bits (294), Expect = 1e-28
Identities = 64/122 (52%), Positives = 78/122 (63%)
Frame = +2
Query: 41 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 220
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 221 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 400
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K FP R YA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120
Query: 401 VK 406
+K
Sbjct: 121 IK 122
>At3g55170.1 68416.m06127 60S ribosomal protein L35 (RPL35C) various
ribosomal L35 proteins
Length = 123
Score = 122 bits (294), Expect = 1e-28
Identities = 64/122 (52%), Positives = 78/122 (63%)
Frame = +2
Query: 41 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 220
M ++K ELR K +LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 221 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 400
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K FP R YA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120
Query: 401 VK 406
+K
Sbjct: 121 IK 122
>At2g39390.1 68415.m04834 60S ribosomal protein L35 (RPL35B)
Length = 123
Score = 122 bits (293), Expect = 1e-28
Identities = 64/122 (52%), Positives = 78/122 (63%)
Frame = +2
Query: 41 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 220
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 221 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 400
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K+ FP R YA
Sbjct: 61 ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120
Query: 401 VK 406
+K
Sbjct: 121 IK 122
>At3g09500.1 68416.m01129 60S ribosomal protein L35 (RPL35A) similar
to 60S ribosomal protein L35 GB:AAC27830
Length = 123
Score = 121 bits (292), Expect = 2e-28
Identities = 64/122 (52%), Positives = 78/122 (63%)
Frame = +2
Query: 41 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 220
M ++K ELR K LRVAKVTGG +KLSKI+VVRK+IA+V V
Sbjct: 1 MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60
Query: 221 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 400
QK K LR YKNKK PLDLR KKTRA+R+ LTKH+A +KT +E +K+ FP R YA
Sbjct: 61 SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120
Query: 401 VK 406
+K
Sbjct: 121 IK 122
>At5g25330.1 68418.m03005 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 366
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 218 VYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 361
V H VN +H + YKPL++RA+ + +R A ++ +TRK+
Sbjct: 290 VTHVDWSVN--DHGHPRTYKPLEVRAELIQKLRSARPRYGDGNRTRKD 335
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 29.1 bits (62), Expect = 1.3
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 164 SKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 343
S SK+R + K + ++ K RN K+ + +DL+ + A + L ++A
Sbjct: 73 SASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLKLEDLVAFKAKLEAYQAG 132
Query: 344 IKTRKEIRKKSLFPPRV 394
+K RK + + L P +
Sbjct: 133 LK-RKHVEMEDLSSPSI 148
>At4g14350.2 68417.m02211 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 125 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 271
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At4g14350.1 68417.m02210 protein kinase family protein contains
similarity to Swiss-Prot:O13310 serine/threonine-protein
kinase orb6 [Schizosaccharomyces pombe]
Length = 551
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 125 TNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKK 271
+N++ T G LS I + A A++YI H KM++ K ++
Sbjct: 27 SNVKEGPKTAGGEEALSNITKEKAAAAKLYIENHYKMQMQSLQERKERR 75
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 269 KYKPLDLRAKKTRAMRKALTKHEAKIKTRKE 361
KY+P D AKK R ++KA + E K K+
Sbjct: 93 KYRPEDKAAKKERLVKKAQAEAEGKPSESKK 123
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 269 KYKPLDLRAKKTRAMRKALTKHEAK 343
KY+P D AKK R + KA + E K
Sbjct: 92 KYRPEDKAAKKERLLNKAQAEAEGK 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,261,850
Number of Sequences: 28952
Number of extensions: 115084
Number of successful extensions: 350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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